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Fu, Yong-Bi, Ph.D.

Chercheur scientifique, diversité génétique des cultures

Coordonnées :

107 Science Place
Saskatoon, (Saskatchewan) S7N 0X2
Téléphone : 306-385-9298
Télécopieur : 306-385-9489
Courriel : yong-bi.fu@agr.gc.ca

Domaines d'expertise :

  • génétique des populations de plantes et de la conservation
  • diversité génétique et domestication des cultures
  • caractérisation moléculaire et conservation du matériel génétique végétal
  • conservation in situ et utilisation des plantes indigènes
  • marqueurs moléculaires et analyse de séquençage d'ADN

Projets en cours :

  • Caractérisation moléculaire des collections de matériel génétique d'avoine et d'orge
  • Inférence moléculaire du lin domestiqué et analyse moléculaire de la folle avoine
  • Étude moléculaire de l'érosion génétique de la variété de gènes des plantes cultivées canadiennes du blé et de l'orge
  • Analyse de diversité moléculaire des espèces végétales indigènes et menacées avec un accent sur la fétuque scabre et le boutelou gracieux

Affiliations :

  • Professeur auxiliaire, Département de phytotechnie, Université de la Saskatchewan
  • Membre du Comité éditorial sur la biodiversité
  • Corédacteur, Communications in Biometry and Crop Science

Publications de recherche

2019

  • Fu YB. 2019. A molecular view of flax gene pool. In: Cullis C (ed) – Genetics and Genomics of Linum. Springer Science+Business Media New York, Chapter 2, pp. 17-37.

2017

  • Fu YB, and Yang MH. 2016. Genotyping-by-sequencing and its application to oat genomic research. In: Sebastian Gasparis (ed) Oat – Methods and Protocols. Springer Science+Business Media New York, pp 169-187
  • Fu, Y.-B., Yang, M.-H., Zeng, F., Biligetu, B. (2017). Searching for an accurate marker-based prediction of an individual quantitative trait in molecular plant breeding, 8 http://dx.doi.org/10.3389/fpls.2017.01182
  • Fu, Y.B., Yang, M.-H., Horbach, C., Kessler, D., Diederichsen, A., You, F.M., et Wang, H. (2015). « Patterns of SSR variation in bread wheat (Triticum aestivum L.) seeds under ex situ genebank storage and accelerated ageing. », Genetic Resources and Crop Evolution, 62(8), p. 1-14. doi : 10.1007/s10722-015-0349-9

2016

  • Ahmed, Z., Yang, H., Fu, Y.B. (2016). The associative changes in scutellum nuclear content and morphology with viability loss of naturally aged and accelerated aging wheat (Triticum aestivum) seeds, 7(September2016), http://dx.doi.org/10.3389/fpls.2016.01474
  • Fu, Y.B., Dong, Y., et Yang, M.-H. (2016). « Multiplexed shotgun sequencing reveals congruent three-genome phylogenetic signals for four botanical sections of the flax genus Linum. », Molecular Phylogenetics and Evolution, 101, p. 122-132. doi : 10.1016/j.ympev.2016.05.010
  • Fu, Y.B., Peterson, G.W., et Dong, Y. (2016). « Increasing genome sampling and improving SNP genotyping for genotyping-by-sequencing with new combinations of restriction enzymes. », G3: Genes, Genomes, Genetics, 6(4), p. 845-856. doi : 10.1534/g3.115.025775
  • Yan, H., Bekele, W. A., Wight, C. P., Peng, Y., Langdon, T., Latta, R. G., Fu, Y.-B., Diederichsen, A., Howarth, C. J., Jellen, E. N., Boyle, B., Wei, Y., and Tinker, N. A., 2016: High-density marker profiling confirms ancestral genomes of Avena species and identifies D-genome chromosomes of hexaploid oat. Theoretical and Applied Genetics 129, 2133–2149.
  • Yang MH, Fu YB (2016) An R version of FPTest for testing differences in allelic count. Conservation Genet Resour (2016). doi:10.1007/s12686-016-0644-6

2015

2014

  • Fu, Y.B. (2014). « Genetic Diversity Analysis of Highly Incomplete SNP Genotype Data with Imputations: An Empirical Assessment. », G3: Genes, Genomes, Genetics, 4(5), p. 891-900. doi : 10.1534/g3.114.010942
  • Fu, Y.B., Cheng, B.F., et Peterson, G.W. (2014). « Genetic diversity analysis of yellow mustard (Sinapis alba L.) germplasm based on genotyping by sequencing », Genetic Resources and Crop Evolution, 61(3), p. 579-594. doi : 10.1007/s10722-013-0058-1
  • Fu, Y.B., Wangsomnuk, P.P., et Ruttawat, B. (2014). « Thai elite cassava genetic diversity was fortuitously conserved through farming with different sets of varieties. », Conservation Genetics, 15(6), p. 1463-1478. doi : 10.1007/s10592-014-0631-y
  • Peterson, G.W., Dong, Y., Horbach, C., et Fu, Y.B. (2014). « Genotyping-By-Sequencing for Plant Genetic Diversity Analysis: A Lab Guide for SNP Genotyping. », Diversity, 6(4), p. 665-680. doi : 10.3390/d6040665
  • You, F.M., Li, P., Kumar, S., Ragupathy, R., Li, Z.N., Fu, Y.B., et Cloutier, S. (2014). « Genome-wide Identification and Characterization of the Gene Families Controlling Fatty Acid Biosynthesis in Flax (Linum usitatissimum L). », Journal of Proteomics & Bioinformatics, 7(10), p. 310-326. doi : 10.4172/jpb.1000334

2013

2012

  • Fu, Y.B. (2012). « Genetic structure in a core subset of cultivated barley germplasm. », Crop Science, 52(3), p. 1195-1208. doi : 10.2135/cropsci2011.08.0405
  • Fu, Y.B. (2012). « Population-based resequencing analysis of wild and cultivated barley revealed weak domestication signal of selection and bottleneck in the Rrs2 scald resistance gene region. », Genome, 55(2), p. 93-104. doi : 10.1139/G11-082
  • Fu, Y.B. (2012). « Population-based resequencing revealed an ancestral winter group of cultivated flax: implication for flax domestication processes. », Ecology and Evolution, 2(3), p. 622-635. doi : 10.1002/ece3.101
  • Fu, Y.B. et Horbach, C. (2012). « Genetic Diversity in A Core Subset of Wild Barley Germplasm. », Diversity, 4(2), p. 239-257. doi : 10.3390/d4020239
  • Fu, Y.B. et Peterson, G.W. (2011). « Developing genomic resources in two Linum species via 454 pyrosequencing and genomic reduction. », Molecular Ecology Resources, 12(3), p. 492-500. doi : 10.1111/j.1755-0998.2011.03100.x
  • Fu, Y.B., Diederichsen, A., et Allaby, R.G. (2012). « Locus-specific view of flax domestication history. », Ecology and Evolution, 2(1), p. 139-152. doi : 10.1002/ece3.57
  • Mornkham, T., Wangsomnuk, P.P., Wangsomnuk, P., Jogloy, S., Patanothai, A., et Fu, Y.B. (2012). « Comparison of five DNA extraction methods for molecular analyses of Jerusalem artichoke (Helianthus tuberosus L.). », Genetics and Molecular Research, 11(1), p. 572-581. doi : 10.4238/2012.March.8.5
  • Nevo, E., Fu, Y.B., Pavlicek, T., Khalifa, S., Tavasi, M., et Beiles, A. (2012). « Evolution of wild cereals during 28 years of global warming in Israel. », Proceedings of the National Academy of Sciences of the USA (PNAS), 109(9), p. 3412-3415. doi : 10.1073/pnas.1121411109
  • Pitt, W.M., Bailey, K.L., Fu, Y.B., et Peterson, G.W. (2012). « Biological and genetic characterization of Phoma macrostoma isolates with bioherbicidal activity. », Biocontrol Science and Technology, 22(7), p. 813-835. doi : 10.1080/09583157.2012.691159
  • Uysal, H., Kurt, O., Fu, Y.B., Diederichsen, A., et Kusters, P.M. (2012). « Variation in phenotypic characters of pale flax (Linum bienne Mill.) from Turkey. », Genetic Resources and Crop Evolution, 59(1), p. 19-30. doi : 10.1007/s10722-011-9663-z

2011

2010

  • Fu, Y.B. (2010). « FPTest: a SAS routine for testing differences in allelic count. », Molecular Ecology Resources, 10(2), p. 389-392. doi : 10.1111/j.1755-0998.2009.02752.x
  • Fu, Y.B. et Allaby, R.G. (2010). « Phylogenetic network of Linum species as revealed by non-coding chloroplast DNA sequences. », Genetic Resources and Crop Evolution, 57(5), p. 667-677. doi : 10.1007/s10722-009-9502-7
  • Fu, Y.B. et Gugel, R.K. (2010). « Diversité génétique des cultivars de colza (Brassica napus L.) élite canadiens avant et après l’avènement du canola. », Canadian Journal of Plant Science, 90(1), p. 23-33. doi : 10.4141/CJPS09073
  • Fu, Y.B. et Peterson, G.W. (2010). « Characterization of expressed sequence tag-derived simple sequence repeat markers for 17 Linum species. », Botany, 88(5), p. 537-543. doi : 10.1139/B10-019
  • Fu, Y.B., Peterson, G.W., McCallum, B.D., et Huang, L. (2010). « Population based resequencing analysis of improved wheat germplasm at wheat leaf rust resistance locus Lr21. », Theoretical and Applied Genetics (TAG), 121(2), p. 271-281. doi : 10.1007/s00122-010-1308-7
  • Qiu, J., Bai, Y., Fu, Y.B., et Wilmshurst, J.F. (2010). « Patterns of amplified restriction fragment polymorphism in the germination of Festuca hallii seeds. », Seed Science Research, 20(3), p. 153-161. doi : 10.1017/S0960258510000188
  • Qiu, J., Bai, Y., Fu, Y.B., et Wilmshurst, J.F. (2010). « Spatial variation in temperature thresholds during seed germination of remnant Festuca hallii populations across the Canadian prairie. », Environmental and Experimental Botany, 67(3), p. 479-486. doi : 10.1016/j.envexpbot.2009.09.002
  • Uysal, H., Fu, Y.B., Kurt, O., Peterson, G.W., Diederichsen, A., et Kusters, P.M. (2010). « Genetic diversity of cultivated flax (Linum usitatissimum L.) and its wild progenitor pale flax (Linum bienne Mill.) as revealed by ISSR markers. », Genetic Resources and Crop Evolution, 57(7), p. 1109-1119. doi : 10.1007/s10722-010-9551-y

2009

Autres publications relatives à la science

2018

  • Fu YB (2017) Genomic characterization of PGRC germplasm collections: An update
  • Fu YB (2018) Updating the evolutionary paradigm of hexaploid oat. Plant and Animal Genome Conference, San Diego, CA, January 12 to 17, 2018
  • Fu YB, Yang M-H, Zeng F, Biligetu B. Searching for an accurate marker-based prediction of an individual quantitative trait in molecular plant breeding. Invited by Dr. Rajeev K Varshney, ICRISAT, India, for Genomics-Assisted Breeding Workshop at Plant and Animal Genome Conference at San Diego, CA, January 13-18, 2018

2017

  • Fu YB and Tinker NA (2017) An update on PGRC oat germplasm research. Oral presentation by Nick Tinker at AAFC / USDA Oat Forum, Cornell, Ithaca, New York, November 13-14, 2017
  • Fu YB (2017) Evidence for congruent three-genome phylogenetic signals for four botanical sections of the flax genus Linum. . Invited by Dr. Sylvie Cloutier, AAFC, for Flax Genomics Workshop at Plant and Animal Genome Conference at San Diego, January 13-18, 2017
  • Fu YB (2017) Evidence for congruent three-genome phylogenetic signals for four botanical sections of the flax genus Linum. . Invited by Dr. Sylvie Cloutier, AAFC, for Flax Genomics Workshop at Plant and Animal Genome Conference at San Diego, January 13-18, 2017
  • Fu YB (2017) Evidence for congruent three-genome phylogenetic signals for four botanical sections of the flax genus Linum. 2017 Annual Meeting of the Society for Molecular Biology & Evolution, Austin, Texas, USA, July 2nd – 6th, 2017
  • Fu YB (2017) Searching for a roadmap for conserving plant genetic resources. Invited by Dr. Luis Fernando Flores Lui, President of the Organizing Committee, XI International Symposium on Genetic Resources for the Americas and the Caribeean. Guadalajara, Jalisco, Mexico, October 15-18, 2017
  • Fu YB (2017) Towards a better monitoring of seed ageing under ex situ seed conservation. EUCARPIA Genetic Resources 2017, Montpellier, France, May 8-11, 2017

2016

  • Fu YB (2016) A new lab guide for genotyping-by-sequencing for plant genetic diversity analysis. The oral presentation at Plant and Animal Genome XXIV 2016 San Diego 2016/01/08 - 2016/01/13
  • Fu YB (2016) A new lab guide on genotyping-by-sequencing for plant genetic diversity. The oral presentation at EUCARPIA Zurich 2016/08/28 - 2016/09/01
  • Fu YB (2016) Genotyping-by-Sequencingfor Genetic Diversity Analysis. The oral presentation at Canadian Society for Ecology and Evolution - 2016 Annual Meeting St. John 2016/07/07 - 2016/07/11
  • Fu YB (2016) Molecular Characterization of Plant Germplasm in Plant Gene Resources of Canada
  • Fu YB, Cloutier S, Tinker N (2016) Molecular characterization of plant germplasm in Plant Gene Resources of Canada: some lessons learnt for DivSeek. DivSeek Workshop. Saskatoon, Sk, 18 June 2016
  • Kessler D, Fu YB (2016) Research updates on Plant Gene Resources of Canada. Joint National Plant Germplasm System Meeting Fort Collins 2016/06/14 - 2016/06/16
  • You FM, Li P, Ragupathy R, Kumar S, Zhu T, Luo M-C, Duguid SD, Rashid K, Booker H, Deyholos M, Fu Y-B, Sharpe A, Cloutier S (2016) The draft flax genome pseudomolecules. 66th Flax Institute of the United States, Fargo, North Dakota, March 31-April 1, 2016.
  • You, F.M., Li, P., Ragupathy, R., Kumar, S., Zhu, T., Luo, M.-C., Duguid, S.D., Rashid, K.Y., Booker, H.M., Deyholos, M.K., Fu, Y.B., Sharpe, A.G., et Cloutier, S. (2016). « The Draft Flax Genome Pseudomolecules. », 66th Flax Institute of the United States, Holiday Inn, Fargo, North Dakota, USA, March 31-April 1, 2016, p. 17-24.

2015

  • You F, Li P, Kumar S, Ragupathy R, Banik M, Duguid S, Booker H, Deyholos M, Fu Y-B, Sharpe AG, Cloutier S (2015) The refined flax genome, its evolution and application. Proc 23rd Plant and Animal Genome meeting, San Diego, CA, 10-15 Jan, P1039
  • You, F.M., Li, P., Kumar, S., Ragupathy, R., Banik, M., Duguid, S.D., Booker, H.M., Deyholos, M.K., Fu, Y.B., Sharpe, A.G., et Cloutier, S. (2015). « The refined flax genome, its evolution and application. », XXIII Plant and Animal Genome Conference, San Diego, CA, USA, January 10-14, 2015, P1039. (Affiche)

2013

  • You, F.M., Kumar, S., Banik, M., Ragupathy, R., Deyholos, M.K., Fu, Y.B., Sharpe, A.G., et Cloutier, S. (2013). « Ordering the draft genome sequence of flax (Linum usitatissimum). », Plant & Animal Genome XXI Conference, Town & Country Convention Center, San Diego, CA, USA, January 12-16, 2013.
  • You, F.M., Kumar, S., Ragupathy, R., Deyholos, M.K., Fu, Y.B., Sharpe, A.G., et Cloutier, S. (2013). « Organization and evolution of the flax genome. », 2013 CSPB/SCBV Annual General Meeting, Laval University, Quebec City, Canada, June 25-28, 2013, Poster no. F6, page no. 89 of the abstract book. (Affiche)

2012

  • Biligetu, B., Schellenberg, M.P., et Fu, Y.B. (2012). « AFLP variation in native populations of side-oats grama (Bouteloua curtipendula (Michx.) Torr.) and its corresponding selected and multiple-site composite populations », Plant Canada 2012 (joint meeting of the Canadian Society of Agronomy (CSA), Canadian Society for Horticultural Science (CSHS), Certified Crop Advisors (CCA), North American Fruit Explorers (NAFEX)): Adapting Crops to Change, University of Saskatchewan, Saskatoon, SK, Canada, July 16-19, 2012. (Affiche)

2009

  • Fu, Y.B. (2009). « Was flax first domesticated for oil or fibre?. », 74th Symposium on Evolution - the Molecular Landscape, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, Canada, May 27-June 2, 2009. (Affiche)
  • Zhou, R., Tsang, E., Fu, Y.B., et Gruber, M.Y. (2009). « Rapid determination of S-Adenosylmethionine and S-Adenosylhomocysteine in plant tissues by UPLC-Tandem Mass Spectrometry. », 5th International Conference of the Metabolomics Society, Crowne Plaza Chateau Lacombe, Edmonton, AB, Canada, August 30-September 2, 2009. (Affiche)
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