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You, Frank M., Ph.D.

Cette page contient une liste de publications. Pour le profil complet de ce scientifique, voir la page Frank You.

Publications de recherche

2019

  • Cloutier S, You FM, Soto-Cerda BJ (2019) Linum Genetic Markers, Maps and QTL Discovery. In: Genetics and Genomics of Linum, Plant Genetics and Genomics: Crops and Models 23, Cullis CA (ed), Springer Nature, Switzerland, Chap 7, doi.org/10.1007/978-3-030-23964-0_7
  • You FM, Cloutier S (2019) Assembly of the Flax Genome into Chromosomes. In: Genetics and Genomics of Linum, Plant Genetics and Genomics: Crops and Models 23, Cullis CA (ed), Springer Nature, Switzerland, Chap 5, doi.org/10.1007/978-3-030-23964-0_5

2018

  • Sandhu, K.S., You, F.M., Conner, R.L., Balasubramanian, P.M., Hou, A. (2018). Genetic analysis and QTL mapping of the seed hardness trait in a black common bean (Phaseolus vulgaris) recombinant inbred line (RIL) population, 38(3), http://dx.doi.org/10.1007/s11032-018-0789-y
  • Soto-Cerda, B.J., Cloutier, S., Quian, R., Gajardo, H.A., Olivos, M., You, F.M. (2018). Genome-wide association analysis of mucilage and hull content in flax (Linum usitatissimum l.) seeds, 19(10), http://dx.doi.org/10.3390/ijms19102870
  • You, F.M., Xiao, J., Li, P., Yao, Z., Jia, G., He, L., Kumar, S., Soto-Cerda, B., Duguid, S.D., Booker, H.M., Rashid, K.Y., Cloutier, S. (2018). Genome-wide association study and selection signatures detect genomic regions associated with seed yield and oil quality in flax, 19(8), http://dx.doi.org/10.3390/ijms19082303

2017

  • Fu, Y.B., Yang, M.-H., Horbach, C., Kessler, D., Diederichsen, A., You, F.M., et Wang, H. (2015). « Patterns of SSR variation in bread wheat (Triticum aestivum L.) seeds under ex situ genebank storage and accelerated ageing. », Genetic Resources and Crop Evolution, 62(8), p. 1-14. doi : 10.1007/s10722-015-0349-9
  • Kassa, M.T., You, F.M., Hiebert, C.W., Pozniak, C.J., Fobert, P.R., Sharpe, A.G., Menzies, J.G., Humphreys, D.G., Rezac Harrison, N., Fellers, J.P., McCallum, B.D., McCartney, C.A. (2017). Highly predictive SNP markers for efficient selection of the wheat leaf rust resistance gene Lr16, 17(1), http://dx.doi.org/10.1186/s12870-017-0993-7
  • Luo, M.C., Gu, Y.Q., Puiu, D., Wang, H., Twardziok, S.O., Deal, K.R., Huo, N., Zhu, T., Wang, L., Wang, Y., McGuire, P.E., Liu, S., Long, H., Ramasamy, R.K., Rodriguez, J.C., Van Sonny, L., Yuan, L., Wang, Z., Xia, Z., Xiao, L., Anderson, O.D., Ouyang, S., Liang, Y., Zimin, A.V., Pertea, G., Qi, P., Bennetzen, J.L., Dai, X., Dawson, M.W., Müller, H.G., Kugler, K., Rivarola-Duarte, L., Spannagl, M., Mayer, K.F.X., Lu, F.H., Bevan, M.W., Leroy, P., Li, P., You, F.M., Sun, Q., Liu, Z., Lyons, E., Wicker, T., Salzberg, S.L., Devos, K.M., Dvoák, J. (2017). Genome sequence of the progenitor of the wheat D genome Aegilops tauschii, 551(7681), 498-502. http://dx.doi.org/10.1038/nature24486
  • Ren J, Chen L, Jin X, Zhang M, You F, Wang J, Frenkel V, Yin X, Nevo E, Sun D, Luo M and Peng J (2017). Solar radiation-associated adaptive SNP genetic differentiation in wild emmer wheat, Triticum dicoccoides. Front. Plant Sci. 8:258. doi: 10.3389/fpls.2017.00258
  • You FM, Jia G, Xiao J, Duguid D, Rashid K, Booker H, Cloutier S (2017) Genetic variability of 27 traits in a core collection of flax (Linum usitatissimum L.). Frontiers in Plant Science, 8:1636.

2016

  • Hiebert, C.W., Kassa, M.T., McCartney, C.A., You, F.M., Rouse, M.N., Fobert, P., and Fetch, T. 2016. Genetics and mapping of seedling resistance to Ug99 stem rust in winter wheat cultivar Triumph 64 and differentiation of SrTmp, SrCad, and Sr42. Theor. Appl. Genet. 129:2171-2177. DOI 10.1007/s00122-016-2765-4
  • Kassa, M.T., Haas, S., Schliephake, E., Lewis, C., You, F.M., Pozniak, C.J., Krämer, I., Perovic, D., Sharpe, A.G., Fobert, P., Koch, M., Wise, I.L., Fenwick, P., Berry, S., Simmonds, J., Hourcade, D., Senellart, P., Duchalais, L., Robert, O., Förster, J., Thomas, J.B., Friedt, W., Ordon, F., Uauy, C., et McCartney, C.A. (2016). « A saturated SNP linkage map for the orange wheat blossom midge resistance gene Sm1. », Theoretical and Applied Genetics (TAG), p. 1-11. doi : 10.1007/s00122-016-2720-4
  • Kassa, M.T., You, F.M., Fetch Jr., T.G., Fobert, P., Sharpe, A.G., Pozniak, C.J., Menzies, J.G., Jordan, M.C., Humphreys, D.G., Zhu, T., Luo, M.-C., McCartney, C.A., et Hiebert, C.W. (2016). « Genetic mapping of SrCad and SNP marker development for marker assisted selection of Ug99 stem rust resistance in wheat. », Theoretical and Applied Genetics (TAG). doi : 10.1007/s00122-016-2709-z
  • Li P, Quan X, Jia G, Xiao J, Cloutier S, You FM (2016) RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants. BMC Genomics, 17(1):852.
  • Muñoz-Amatriaín M, Mirebrahim H, Xu P, Wanamaker SI, Luo M, Alhakami H, Alpert M, Atokple I, Batieno BJ, Boukar O, Bozdag S, Cisse N, Drabo I, Ehlers JD, Farmer A, Fatokun C, Gu YQ, Guo YN, Huynh BL, Jackson SA, Kusi F, Lawley CT, Lucas MR, Ma Y, Timko MP, Wu J, You FM, Barkley NA, Roberts PA, Lonardi S, Close TJ (2017) Genome resources for climate-resilient cowpea, an essential crop for food security. Plant J. 2017 Mar;89(5):1042-1054. doi: 10.1111/tpj.13404.
  • Wang Y, Xu L, Thilmony R, You FM, Gu YQ, Coleman-Derr D (2017) PIECE 2.0: an update for the plant gene structure comparison and evolution database. Nucleic Acids Res, 45(D1):1015-1020. doi: 10.1093/nar/gkw935.
  • Wang, Y., Tiwari, V.K., Rawat, N., Gill, B.S., Huo, N., You, F.M., Coleman-Derr, D., et Gu, Y.Q. (2016). « GSP: a web-based platform for designing genome-specific primers in polyploids. », Bioinformatics, 32(6), p. 1-2. doi : 10.1093/bioinformatics/btw134
  • Xiao, J., Chen, X., Xu, Z., Guo, J., Wu, Z., Wang, H., Zhu, X., Nie, M., Bie, T., Cheng, S., Zhu, T., Luo, M.-C., You, F.M., et Wang, X. (2016). « Validation and diagnostic marker development for a genetic region associated with wheat yellow mosaic virus resistance. », Euphytica, p. 1-11. doi : 10.1007/s10681-016-1731-1
  • You FM, Jia G, Cloutier S, Booker HM, Duguid SD, Rashid K (2016) A method of estimating broad-sense heritability for quantitative traits in the type 2 modified augmented design. Journal of Plant Breeding and Crop Science, 8(11):257-272.
  • You, F.M., Booker, H.M., Duguid, S.D., Jia, G., et Cloutier, S. (2016). « Accuracy of genomic selection in biparental populations of flax (Linum usitatissimum L.). », The Crop Journal. doi : 10.1016/j.cj.2016.03.001
  • You, F.M., Song, Q.J., Jia, G., Cheng, Y., Duguid, S.D., Booker, H.M., et Cloutier, S. (2016). « Estimation of genetic parameters and their sampling variances for quantitative traits in the type 2 modified augmented design. », The Crop Journal, 4(2), p. 107-118. doi : 10.1016/j.cj.2016.01.003

2015

  • Hiebert, C.W., Spielmeyer, W., McCartney, C., Kassa, M.T., Fetch Jr., T.G., You, F.M., Menzies, J.G., Humphreys, D.G., et McCallum, B.D. (2015). « Stem rust resistance: two approaches. », dans Ogihara, Y. et al. (dir.) - Proceedings of the 12th International Wheat Genetics Symposium, Springer, Chapitre 20, p. 183-192.
  • Kumar, S., You, F.M., Duguid, S.D., Booker, H.M., Rowland, G.G., et Cloutier, S. (2015). « QTL for fatty acid composition and yield in linseed (Linum usitatissimum L.). », Theoretical and Applied Genetics (TAG). doi : 10.1007/s00122-015-2483-3
  • Luo, M.-C., You, F.M., Li, P., Wang, J., Zhu, T., Dandekar, A.M., Leslie, C.A., Aradhya, M., McGuire, P.E., et Dvorak, J. (2015). « Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials. », BMC Genomics, 16(707), p. 1-17. doi : 10.1186/s12864-015-1906-5
  • McCartney, C.A., Kassa, M.T., Wise, I.L., Smith, M., Pozniak, C.J., Uauy, C., Forster, R.J., Ordon, F., Sharpe, A.G., Fobert, P., Fox, S.L., You, F.M., Thomas, J., Hiebert, C.W., Jordan, M.C., et Costamagna, A. (2015). « Management of Wheat Midge with Host Genetics. », Department of Entomology Seminar Series, University of Manitoba, Winnipeg, MB, Canada, January 27, 2015, Invited presentation.
  • Muñoz-Amatriaín, M., Lonardi, S., Luo, M., Madishetty, K., Svensson, J.T., Moscou, M.J., Wanamaker, S., Jiang, T., Kleinhofs, A., Muehlbauer, G., Wise, R.P., Stein, N., Ma, Y., Rodriguez, E., Kudrna, D., Bhat, P.R., Chao, S., Condamine, P., Heinen, S., Resnik, J., Wing, R., Witt, H.N., Alpert, M., Beccuti, M., Bozdag, S., Cordero, F., Mirebrahim, H., Ounit, R., Wu, Y., You, F.M., Zheng, J., Šimková, H., Doležel, J., Grimwood, J., Schmutz, J., Duma, D., Altschmied, L., Blake, T., Bregitzer, P., Cooper, L., Dilbirligi, M., Falk, A., Feiz, L., Graner, A., Gustafsson, P., Haygarth, P.M., Lemaux, P.G., Mammadov, J., et Close, T.J. (2015). « Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome. », The Plant Journal, 84(1), p. 216-227. doi : 10.1111/tpj.12959
  • Sekhwal, M.K., Li, P., Lam, I., Wang, X., Cloutier, S., et You, F.M. (2015). « Disease Resistance Gene Analogs (RGAs) in Plants. », International Journal of Molecular Sciences, 16(8), p. 19248-19290. doi : 10.3390/ijms160819248
  • You, F.M., Cloutier, S., Shan, Y.F., et Ragupathy, R. (2015). « LTR Annotator: Automated Identification and Annotation of LTR Retrotransposons in Plant Genomes. », International Journal of Bioscience, Biochemistry and Bioinformatics, 5(3), p. 165-174. doi : 10.17706/ijbbb.2015.5.3.165-174
  • Zhang, L., Luo, M.-C., You, F.M., Nevo, E., Sun, D.F., et Peng, J. (2014). « Development of Microsatellite Markers in Tung Tree (Vernicia fordii) Using Cassava Genomic Sequences. », Plant Molecular Biology Reporter. doi : 10.1007/s11105-014-0804-3

2014

  • Cabral, A.L., Jordan, M.C., McCartney, C.A., You, F.M., Humphreys, D.G., MacLachlan, R., et Pozniak, C.J. (2014). « Identification of candidate genes, regions and markers for pre-harvest sprouting resistance in wheat (Triticum aestivum L.). », BMC Plant Biology, 14(340). doi : 10.1186/s12870-014-0340-1
  • Deng, P.C., Nie, X.J., Wang, L., Cui, L., Liu, P.X., Tong, W., You, F.M., et les autres (2014). « Computational Identification and Comparative Analysis of miRNAs in Wheat Group 7 Chromosome. », Plant Molecular Biology Reporter, 32(2), p. 487-500. doi : 10.1007/s11105-013-0669-x
  • Nie, X.J., Deng, P.C., Feng, K.W., Liu, P.X., Du, X.H., You, F.M., et Song, W.N. (2014). « Comparative analysis of codon usage patterns in chloroplast genomes of the Asteraceae family. », Plant Molecular Biology Reporter, 32(4), p. 828-840. doi : 10.1007/s11105-013-0691-z
  • Varshney, R.K., Mir, R.R., Bhatia, S., Thudi, M., Hu, Y., Azam, S., Zhang, Y., Jaganathan, D., You, F.M., Gao, J.L., Riera-Lizarazu, O., et Luo, M.-C. (2014). « Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.). », Functional and Integrative Genomics, 14(1), p. 59-73. doi : 10.1007/s10142-014-0363-6
  • Wang, W., Feng, B., Xiao, J., Xia, Z., Zhou, X., Li, P., Zhang, W., Wang, Y., Møller, B., Luo, M.-C., Yang, J., Chen, S., Rabinowicz, P.D., Chen, X., Zhang, H.B., You, F.M., et les autres (2014). « Cassava genome from a wild ancestor to cultivated varieties. », Nature Communications. doi : 10.1038/ncomms6110
  • You, F.M., Li, P., Kumar, S., Ragupathy, R., Li, Z.N., Fu, Y.B., et Cloutier, S. (2014). « Genome-wide Identification and Characterization of the Gene Families Controlling Fatty Acid Biosynthesis in Flax (Linum usitatissimum L). », Journal of Proteomics & Bioinformatics, 7(10), p. 310-326. doi : 10.4172/jpb.1000334

2013

2012

2011

2010

2009

Autres publications relatives à la science

2020

  • Fatima F, McCallum B, Hiebert C, McCartney C, Fedak G, Pozniak C, Edwards T, Ravichandran S, You FM, Cloutier S (2020) Single and multi-locus genome-wide association study for leaf rust resistance in cultivated, progenitor and wild wheat. Proc 28th Plant and Animal Genome Conference, San Diego, USA, Jan 11-15, PO0937

2019

  • Bruskiewich RM, Caron CT, Kucheran LS, Jia G, Young LW, Staton SE, Légaré J-S, Wang Z, Huellas-Bruskiewicz K, Warfield A, Marden E, Bett K, Booker HM, Cloutier S, You FM and Rieseberg LH. The DivSeek Canada Initiative: out of the starting gate. XXVII Plant and Animal Genome Conference, San Diego, USA, January 12-16, 2019 (PO0035)
  • Fatima F, Edwards T, Hiebert C, McCartney C, McCallum B, Henriquez MA, Humphreys G, Cao W, Fedak G, You FM, Cloutier S (2019) Diversity analysis of wheat and wild relatives using the wheat 90K Infinium array. Proc 1st International Wheat Congress, Saskatoon, July 21-27, P217 (poster)
  • Jia G, You FM, Cloutier S, Deyholos MK, and Booker H. The flax breeding database (FlaxDB). XXVII Plant and Animal Genome Conference, San Diego, USA, January 12-16, 2019. PE1082
  • Young LW, Trouve J-P, Speck A, Kutcher R, Rashid KY, You FM, Cloutier S and Booker HM. Mapping rust and powdery mildew resistant genes in flax. XXVII Plant and Animal Genome Conference, San Diego, USA, January 12-16, 2019 (PO0871).

2018

  • Jorden M, You FM (2018) Improved markers for a pre-harvest sprouting QTL on wheat chromosome 3B. Proc 26th Plant and Animal Genome Conference, San Diego, CA, January 13-17, P1042 (poster)
  • You FM, Rashid K, Cloutier S, Chen W, Luo M-C, Zhu (2018) High-quality genome sequences of cultivated (Linum usitatissimum) and wild (L. bienne) flax. Proc 26th Plant and Animal Genome Conference, San Diego, CA, January 13-17, P0911 (poster)
  • Zhu S, Wang L, You FM, Rodriguez JC, Deal KR, Chen L, Li J, Chakraborty S, Balan B, Jiang CZ, Brown PJ, Leslie CA, Aradhya M, Dandekar AM, Kluepfel DA, Dvorak J, LuoM-C (2017) A novel and efficient approach for phasing highly heterozygous plant genomes. Proc 26th Plant & Animal Genome Conference, San Diego, CA, January 13-17, P0193 (poster)

2017

  • House M, Ragupathy R, Vasudevan A, You FM, Jia G, Robinson S, Booker H (2017) Genome-wide approaches to identifying the basis of early flowering in epimutagenized royal Flax. Proc 25th Plant and Animal Genome Conference, San Diego, CA, January 14-18, W327 (workshop oral talk).
  • Rashid K, You FM (2017) Host pathogen interaction between flax and Septoria linicola and the genetics of resistance. Proc 25th Plant and Animal Genome Conference, San Diego, CA, January 14-18.
  • Ravichandran S, You FM, Rashid KY, Young L, Booker HM, Cloutier S (2017) Structural organization and haplotypes of rust resistance genes in flax. Joint Meeting Canadian Phytopathological Society and Canadian Society of Agronomy, Winnipeg, June 18-22, P3 (poster)
  • Sandhu K, You FM, Conner R, Balasubramanian P, Hou A (2018) QTL mapping of seed hardness trait in common bean (Phaseolus vulgaris). Joint Annual Meeting of Canadian Phytopathological Society and Canadian Society of Agronomy, Winnipeg, MB, June 18-22 (poster).
  • Wang Y, Xu L, Thilmony R, You FM, Gu YQ, Coleman-Derr D. (2017) PIECE 2.0: an update for the plant gene structure comparison and evolution database. Nucleic Acids Research, 45(Database issue):1015-1020. doi:10.1093/nar/gkw935.
  • You FM, Rashid K, Yao Z, Cloutier S (2017) Genome-wide association study for Fusarium wilt resistance in flax (Linum usitatissimum L.). Joint Meeting of Canadian Phytopathological Society and Canadian Society of Agronomy, Winnipeg, MB, June 18-22 (poster).

2016

  • Cloutier, S., Deyholos, M.K., Ragupathy, R., Zhu, T., Li, P., Luo, M.-C., et You, F.M. (2016). « BioNano optical map improves the flax reference genome. », XXIV Plant and Animal Genome Conference, San Diego, USA, January 9-13, 2016.
  • Desta DS, Cloutier S (2016) Genomics of drought tolerance in flax (Linum usitatissimum L.) Canadian Society of Agronomy Annual Meeting, Montreal, 24-26 July
  • Dvorak, J., Anderson, O.D., Bennetzen, J.L., Dai, X., Dawson, M.W., Deal, K.R., Devos, K.M., Doležel, J., Gu, Y.Q., Huo, N., Kugler, K.G., Leroy, P., Liang, Y., Liu, Z., Luo, M.-C., Lyons, E., Ma, Z., Mao, L., Mayer, K., McCombie, W.R., McGuire, P.E., Mueller, H.-G., Ouyang, S., Pertea, G., Puiu, D., Salzberg, S.L., Soderlund, C., Sun, Q., Twardziok, S.O., Wang, H., Wang, Y., Wang, Z., Wicker, T., Xiao, L., Xiao, M., You, F.M., Zhu, T., et Zimin, A. (2016). « Reference Sequence of the Genome of Aegilops tauschii, the Progenitor of the Wheat D Genome. », XXIV Plant and Animal Genome Conference, San Diego, USA, January 9-13, 2016.
  • Gu, Y.Q., Wang, Y., Tiwari, V.K., Rawat, N., Gill, B.S., Huo, N., You, F.M., et Coleman-Derr, D. (2016). « GSP: A Web-Based Platform for Designing Genome-Specific Primers in Polyploids. », XXIV Plant and Animal Genome Conference, San Diego, USA, January 9-13, 2016.
  • Kassa, M.T., Perovic, D., Lewis, C., You, F.M., Pozniak, C.J., Schliephake, E., Krämer, I., Sharpe, A.G., Fobert, P., Wise, I.L., Simmonds, J., Ordon, F., Uauy, C., et McCartney, C.A. (2016). « Fine mapping of the orange wheat blossom midge resistance gene Sm1. », XXIV Plant and Animal Genome Conference, San Diego, USA, January 9-13, 2016.
  • Li, P., Cloutier, S., et You, F.M. (2016). « RGAugury: A pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants. », Great Lakes Bioinformatics and Canadian Computational Biology Conference, Toronto, Canada, May 16-19, 2016. (Affiche)
  • McCartney CA, Kassa MT, Pozniak CJ, You FM, Cloutier S, Wise IL, Smith MAH, Sharpe AG, Fobert PR, Kumar S, Burt A, Ordon F, Uauy C, Costamagna AC (2016) Wheat midge resistance: breeding and genetics. Proc 3rd Can Wheat Symposium, Ottawa, Nov22-25, S10
  • McCartney, C.A., Kassa, M.T., Hiebert, C.W., You, F.M., Pozniak, C.J., Fobert, P., Sharpe, A.G., Menzies, J.G., Jordan, M.C., Zhu, T., Luo, M.-C., et Fetch Jr., T.G. (2016). « High resolution mapping of the stem rust resistance gene SrCad. », XXIV Plant and Animal Genome Conference, San Diego, USA, January 9-13, 2016.
  • Sandhu K, You FM, Conner R, Balasubramanian P, Hou A (2016) Genetic analysis of seed hardness trait in a black bean recombinant inbred line (RIL) population. The 10th Canadian Pulse Research Workshop, Winnipeg, MB, October 25-28, 2016.
  • Wang J, Luo M-C, Chen Z, Liu Y, Wang L, You FM, Wei Y, Fu D, Liu D, Dvorak J, Zheng Y (2016) Genomic comparative analysis for the spread and contribution of Aegilops tauschii. 7th International Crop Science Congress, Beijing, August 14-19, 2016 (Oral talk)
  • You FM, Duguid SD, Lam I, Cloutier S, Rashid K, Booker HM (2016) Pedigrees and genetic base of flax varieties registered in Canada. 66th Flax Institute of the United States, Fargo, North Dakota, March 31-April 1, 2016.
  • You FM, Duguid SD, Lam I, Cloutier S, Rashid KY, Booker HM (2016) Pedigrees and genetic base of flax cultivars registered in Canada. Proc 66th Flax Institute of the United States, Fargo, ND, 31 Mar-1 Apr, p 98
  • You FM, Li P, Luo M-C, Duguid SD, Rashid K, Booker HM, Deyholos M, Cloutier S (2016) BioNano genome mapping improves the flax reference genome. 7th International Crop Science Congress, Beijing, August 14-19, 2016 (Oral talk)
  • You FM, Li P, Ragupathy R, Kumar S, Zhu T, Luo M-C, Duguid SD, Rashid K, Booker H, Deyholos M, Fu Y-B, Sharpe A, Cloutier S (2016) The draft flax genome pseudomolecules. 66th Flax Institute of the United States, Fargo, North Dakota, March 31-April 1, 2016.
  • You, F.M., Li, P., Ragupathy, R., Kumar, S., Zhu, T., Luo, M.-C., Duguid, S.D., Rashid, K.Y., Booker, H.M., Deyholos, M.K., Fu, Y.B., Sharpe, A.G., et Cloutier, S. (2016). « The Draft Flax Genome Pseudomolecules. », 66th Flax Institute of the United States, Holiday Inn, Fargo, North Dakota, USA, March 31-April 1, 2016, p. 17-24.
  • Zhu, T., Deal, K.R., Liu, S., Rodriguez-Lecompte, J.C., Puiu, D., Pertea, G., Salzberg, S.L., Zimin, A., You, F.M., Dvorak, J., et Luo, M.-C. (2016). « Construction of pseudomolecules for the Aegilops tauschii genome, the wheat D genome progenitor. », XXIV Plant and Animal Genome Conference, San Diego, USA, January 9-13, 2016.

2015

  • Fofana, B., Ghose, K., McCallum, J.L., You, F.M., et Cloutier, S. (2015). « UGT74S1 is a single-copy gene and is unique In controlling Secoisolariciresinol Diglucoside (SDG) formation in flax. », Botany 2015 Joint Conference: Science and plants for people, Shaw Convention Center, Edmonton, Alberta, Canada, July 25-30, 2015. (Affiche)
  • Fofana, B., Ghose, K., You, F.M., et Cloutier, S. (2015). « UGT74S1 Is Unique In Controlling Secoisolariciresinol Diglucoside (SDG) Formation In Flax. », XXIII Plant and Animal Genome Conference, San Diego, CA, USA, January 10-14, 2015, p. 160. (Résumé)
  • Hiebert, C.W., McCartney, C.A., Kassa, M.T., You, F.M., Pozniak, C.J., Fobert, P., et Fetch Jr., T.G. (2015). « Genetic mapping of resistance to Puccinia graminis race TTKSK in Triumph 64. », Borlaug Global Rust Initiative Workshop, Sydney, Australia, September 17-20, 2015. (Affiche)
  • Kassa, M.T., Hiebert, C.W., You, F.M., Fobert, P., Jordan, M.C., Sharpe, A.G., Pozniak, C.J., Fetch Jr., T.G., Zegeye, T., Menzies, J.G., et McCartney, C. (2015). « Genetic mapping and marker development for high-throughput marker-assisted breeding for Ug99 stem rust resistance gene SrCad/Sr42. », Botany 2015, Shaw Convention Center, Edmonton, Alberta, Canada, July 25-29, 2015.
  • Kassa, M.T., You, F.M., Hiebert, C.W., McCallum, B.D., Cabral, A.L., Panwar, V., Pozniak, C.J., Fetch Jr., T.G., Zegeye, T., Menzies, J.G., Humphreys, D.G., Fobert, P., Sharpe, A.G., Jordan, M.C., et McCartney, C.A. (2015). « Targeting high impact wheat resistance genes for leaf rust, Ug99 stem rust and wheat midge. », Canadian Wheat Alliance Annual Science and Business Meeting (Invited), Saskatoon, SK, Canada, July 14-16, 2015. (Présentation)
  • McCartney, C.A., Kassa, M.T., Wise, I.L., Smith, M., Pozniak, C.J., Uauy, C., Forster, R.J., Ordon, F., Sharpe, A.G., Fobert, P., Fox, S.L., You, F.M., Thomas, J., Hiebert, C.W., Jordan, M.C., et Costamagna, A. (2015). « Management of Wheat Midge with Host Genetics. », Department of Entomology Seminar Series (Invited), University of Manitoba, Winnipeg, MB, Canada, January 27, 2015. (Présentation)
  • McCartney, C.A., Kassa, M.T., You, F.M., McCallum, B.D., Hiebert, C.W., Cabral, A.L., Panwar, V., Pozniak, C.J., Menzies, J.G., Humphreys, D.G., Fobert, P., Sharpe, A.G., et Jordan, M.C. (2015). « Progress towards sequencing the leaf rust resistance gene Lr16. », 9th International Wheat Conference 2015, Sydney, Australia, September 20-25, 2015.
  • Shan, Y.F., Li, P., Duguid, S.D., Cloutier, S., Deyholos, M.K., Wang, Y., Gu, Y.Q., Booker, H.M., et You, F.M. (2015). « FlaxDB: A comprehensive and integrated genome and breeding database for flax improvement. », XXIII Plant and Animal Genome Conference, San Diego, CA, USA, January 10-14, 2015. (Affiche)
  • Soto-Cerda BJ, Duguid S, Booker H, You FM, Rowland G, Cloutier S (2015) Genome wide association study (GWAS) for yield-related traits in flax. Proc 23rd Plant and Animal Genome meeting, San Diego, CA, 10-14 Jan, W294 (invited)
  • Xiang, Y., Bernardy, M.G., Bhagwat, B., Su, L., Li, Z.N., Wiersma, P.A., You, F.M., et Sinotte, P. (2015). « Detection and characterization of viruses associated with sweet cherry mottle leaf diseases. », Canadian Phytopathological Society (CPS) Meeting 2015, Edmonton, AB, Canada, July 25-29, 2015. (Affiche)
  • You F, Li P, Kumar S, Ragupathy R, Banik M, Duguid S, Booker H, Deyholos M, Fu Y-B, Sharpe AG, Cloutier S (2015) The refined flax genome, its evolution and application. Proc 23rd Plant and Animal Genome meeting, San Diego, CA, 10-15 Jan, P1039
  • You, F.M., Li, P., Kumar, S., Ragupathy, R., Banik, M., Duguid, S.D., Booker, H.M., Deyholos, M.K., Fu, Y.B., Sharpe, A.G., et Cloutier, S. (2015). « The refined flax genome, its evolution and application. », XXIII Plant and Animal Genome Conference, San Diego, CA, USA, January 10-14, 2015, P1039. (Affiche)
  • You, F.M., Ragupathy, R., Shan, Y.F., et Cloutier, S. (2015). « LTRAnnotator: automated identification and annotation of LTR retrotransposons in plant genomes. », 2015 International Conference on Bioinformatics and Computer Engineering (ICBCE 2015), Chengdu, China, April 18-19, 2015, Oral presentations; won best paper in the bioinformatics section.

2014

  • Bykova, N.V., Hu, J.-N., Radovanovic, N., You, F.M., et Fan, T. (2014). « Quantitative proteomic approaches to revealing mechanisms of seed dormancy control and pre-harvest sprouting resistance in wheat. », 1st INPPO World Congress on Plant Proteomics: Methodology to Biology, Hamburg, Germany, August 31- September 4, 2014, Member of the Scientific Organizing Committee; Presentation.
  • Cabral, A.L., Jordan, M.C., You, F.M., McCartney, C.A., et Pozniak, C.J. (2014). « Identification of a Maturity QTL That Coincides with a Heading Date Locus on 7D in a DH Population of RL4452/AC Domain. », XXII Plant & Animal Genome Conference, Town & Country Convention Center, San Diego, CA, USA, January 10-15, 2014.
  • Cabral, A.L., Jordan, M.C., You, F.M., McCartney, C.A., et Pozniak, C.J. (2014). « Identification of a maturity QTL that coincides with a heading date locus on 7D in a DH population of RL4452/AC Domain. », 2nd Canadian Wheat Symposium, Saskatoon, SK, Canada, June 8-11, 2014. (Affiche)
  • Cloutier, S., Rowland, G.G., Booker, H.M., Deyholos, M.K., Datla, R.S.S., Duguid, S.D., Fofana, B., Reaney, M.J.T., Selvaraj, G., Smyth, S., Wang, E., Weselake, R.J., You, F.M., Zou, J.W., et Barker, C. (2014). « The TUFGEN project. », 65th Flax Institute, Fargo, North Dakota, USA, March 27-28, 2014, Oral presentation, p. 39-48.
  • Edirisinghe VP, Kutcher HR, Rashid K, Cloutier S, You FM, Booker H (2014) Resistance reaction of flax germplasm to fusarium wilt. APS-CPS joint meeting, Minneapolis, Minnesota, 9-13 August, p 35
  • Kassa, M.T., You, F.M., McCallum, B.D., Hiebert, C.W., Cabral, A.L., Panwar, V., Menzies, J.G., Pozniak, C.J., Sharpe, A.G., Fobert, P., Jordan, M.C., et McCartney, C.A. (2014). « Fine Mapping of the Wheat Leaf Rust Resistance Gene Lr16. », XXII Plant & Animal Genome Conference, Town & Country Convention Center, San Diego, CA, USA, January 10-15, 2014.
  • Laudencia-Chingcuanco, D., You, F.M., Penner, G.A., Byrns, B., et Fowler, D.B. (2014). « Induction of Cold Acclimation in Wheat (Triticum aestivum L.). », XXII Plant & Animal Genome Conference, Town & Country Convention Center, San Diego, CA, USA, January 10-15, 2014.
  • You, F.M., Cloutier, S., Luo, M.-C., et Dvorak, J. (2014). « Genotyping-by-sequencing strategy for genome-wide SNP discovery and genotyping. », 12th Asia Pacific Bioinformatics Conference, Shanghai, China, January 17-19, 2014.

2013

  • Chen, C.-X., You, F.M., Luo, M.-C., Dvorak, J., et Gmitter, F.G. (2013). « Integration of sweet orange genetic and physical maps using BAC end sequence based SNPs and GoldenGate assay. », Plant & Animal Genome XXI Conference, Town & Country Convention Center, San Diego, CA, USA, January 12-16, 2013.
  • Dvorak, J., Luo, M.-C., Gu, Y.Q., You, F.M., Huo, N., Wang, Y., Wang, J.-R., Chen, S., Jorgensen, C., Zhang, Y., McGuire, P.E., Pasternak, S., Stein, J., Ware, D., Kramer, M., McCombie, W.R., Kianian, S.F., Martis, M.M., Mayer, K., Sehgal, S.K., Gill, B.S., Bevan, M., Doležel, J., Lazo, G.R., Anderson, O.D., Massa, A.N., Rabinowicz, P.D., et Devos, K.M. (2013). « A 4-gigabase comparative physical map of Aegilops tauschii, the wheat D-genome progenitor, ppens the window into the evolution of gene content and meaning of genome size in grasses. », Plant & Animal Genome XXI Conference, Town & Country Convention Center, San Diego, CA, USA, January 12-16, 2013.
  • Hiebert, C.W., Spielmeyer, W., McCartney, C.A., Kassa, M.T., Fetch Jr., T.G., You, F.M., Menzies, J.G., Humphreys, D.G., et McCallum, B.D. (2013). « Stem rust resistance - two approaches. », 12th International Wheat Genetics Symposium (IWGS), Yokohama, Japan, September 8-14, 2013, Invited presentation.
  • Kassa, M.T., Hiebert, C.W., You, F.M., Jordan, M.C., Fobert, P., Sharpe, A.G., Pozniak, C.J., Zegeye, T., Fetch Jr., T.G., Menzies, J.G., Humphreys, D.G., et McCartney, C.A. (2013). « Molecular Diagnosis of SrCad and Sr42 resistance genes. », North American Cereal Rust Workers Meeting, Winnipeg, MB, Canada, March 20, 2013.
  • Kassa, M.T., Hiebert, C.W., You, F.M., Jordan, M.C., Fobert, P., Sharpe, A.G., Pozniak, C.J., Zegeye, T., Fetch Jr., T.G., et McCartney, C.A. (2013). « Fine mapping of Ug99 stem rust resistance gene SrCad. », Canadian Phytopathological Society Annual Meeting, Edmonton, AB, Canada, June 16-19, 2013.
  • Kassa, M.T., McCartney, C.A., You, F.M., Hiebert, C.W., Jordan, M.C., Pozniak, C.J., MacLachlan, R., McCallum, B.D., Fox, S.L., Wise, I.L., et Thomas, J.B. (2013). « Marker development for wheat leaf rust resistance gene Lr16 and wheat midge resistance gene Sm1 in Canadian wheat cultivars. », Plant & Animal Genome XXI Conference, Town & Country Convention Center, San Diego, CA, USA, January 12-16, 2013.
  • Kassa, M.T., You, F.M., McCallum, B.D., Hiebert, C.W., Cabral, A.L., Menzies, J.G., Pozniak, C.J., Sharpe, A.G., Fobert, P., Jordan, M.C., et McCartney, C.A. (2013). « Fine mapping of the wheat leaf rust resistance gene Lr16. », 12th International Wheat Genetics Symposium (IWGS), Yokohama, Japan, September 8-14, 2013. (Affiche)
  • Klocová, B., Kladivová, M., Frenkel, Z., Kumar, A., Kianian, S.F., Šimková, H., Šafář, J., Hu, Y., You, F.M., Luo, M.-C., Korol, A., Doležel, J., et Valarik, M. (2013). « Toward the sequence-ready physical map of bread wheat chromosome 4A. », Plant & Animal Genome XXI Conference, Town & Country Convention Center, San Diego, CA, USA, January 12-16, 2013.
  • Kumar, S., You, F.M., et Cloutier, S. (2013). « The 10K+ SNP maps of flax. », Plant & Animal Genome XXI Conference, Town & Country Convention Center, San Diego, CA, USA, January 12-16, 2013.
  • McCartney, C.A., Kassa, M.T., Cabral, A.L., Hiebert, C.W., You, F.M., Jordan, M.C., Menzies, J.G., Humphreys, D.G., Fellers, J.P., Rezac, N., Fobert, P., Sharpe, A.G., Pozniak, C.J., et McCallum, B.D. (2013). « Molecular Analysis of the Lr16 Locus. », North American Cereal Rust Workers Meeting, Winnipeg, MB, Canada, March 20, 2013.
  • McCartney, C.A., Kassa, M.T., Wise, I.L., Smith, M., Fox, S.L., You, F.M., Thomas, J., Hiebert, C.W., Jordan, M.C., et Pozniak, C.J. (2013). « Efforts to manage wheat midge through host genetics. », 69th Annual Meeting of the Entomological Society of Manitoba, Winnipeg, MB, Canada, November 1-2, 2013, Invited Keynote Speech.
  • Ragupathy, R., You, F.M., et Cloutier, S. (2013). « Genome-wide comparative analysis of LTR retrotransposon dynamics In flax (Linum usitatissimum) and Its related genomes, cassava (Manihot esculenta) and poplar (Populus trichocarpa). », Plant & Animal Genome XXI Conference, Town & Country Convention Center, San Diego, CA, USA, January 12-16, 2013.
  • You, F.M., Kumar, S., Banik, M., Ragupathy, R., Deyholos, M.K., Fu, Y.B., Sharpe, A.G., et Cloutier, S. (2013). « Ordering the draft genome sequence of flax (Linum usitatissimum). », Plant & Animal Genome XXI Conference, Town & Country Convention Center, San Diego, CA, USA, January 12-16, 2013.
  • You, F.M., Kumar, S., Ragupathy, R., Deyholos, M.K., Fu, Y.B., Sharpe, A.G., et Cloutier, S. (2013). « Organization and evolution of the flax genome. », 2013 CSPB/SCBV Annual General Meeting, Laval University, Quebec City, Canada, June 25-28, 2013, Poster no. F6, page no. 89 of the abstract book. (Affiche)

2012

  • Cloutier, S., Banik, M., You, F.M., Radovanovic, N., Miranda, D.E., Reimer, E., Ward, K., Walichnowski, A.Z., Rowland, G.G., et Duguid, S.D. (2012). « High Density SSR- and SNP-based Genetic Maps of Flax. », Plant & Animal Genome XX Conference, Town & Country Convention Center, San Diego, CA, USA, January 14-18, 2012. (Affiche)
  • Dvorak, J., Luo, M.-C., Deal, K.R., McGuire, P.E., Wang, J.-R., You, F.M., Huo, N., Gu, Y.Q., Anderson, O.D., Li, W., Sehgal, S.K., Gill, B.S., Stein, J., Pasternak, S., Olson, A.F., Ware, D., McCombie, W.R., Martis, M.M., Mayer, K., et Doležel, J. (2012). « Physical map and shotgun sequence of the Aegilops tauschii genome. », Plant & Animal Genome XX Conference, Town & Country Convention Center, San Diego, CA, USA, January 14-18, 2012. (Affiche)
  • Huo, N., Dong, L., Wang, Y., You, F.M., Luo, M.-C., Dvorak, J., Anderson, O.D., et Gu, Y.Q. (2012). « Sequencing wheat BAC pools by 454 Titanium plus system. », Plant & Animal Genome XX Conference, Town & Country Convention Center, San Diego, CA, USA, January 14-18, 2012. (Affiche)
  • Kassa, M.T., McCartney, C.A., You, F.M., McCallum, B.D., Hiebert, C.W., et Jordan, M.C. (2012). « Marker development for the wheat leaf rust resistance gene Lr16 using a comparative genomic approach. », 22nd International Triticeae Mapping Initiative (ITMI) and 4th National Wheat Genomics Committee Joint Workshop, Fargo, ND, USA, June 25-29, 2012.
  • Kladivová, M., Jakobson, I., Peusha, H., Järve, K., Timofejeva, L., Reis, D., Klocová, B., Hu, Y., You, F.M., Luo, M.-C., Kumar, A., Kianian, S.F., Šimková, H., Šafář, J., Valarik, M., et Doležel, J. (2012). « Combined Approaches Toward Mapping and Cloning of Powdery Mildew Resistance Gene QPm.tut-4A Introgresed to Bread Wheat from T. militinae. », Plant & Animal Genome XX Conference, Town & Country Convention Center, San Diego, CA, USA, January 14-18, 2012. (Affiche)
  • Kumar, S., You, F.M., et Cloutier, S. (2012). « High density genetic maps for flax. », Genomics: The Power and the Promise, the Gairdner Foundation and Genome Canada, Ottawa, ON, Canada, November 27-28, 2012.
  • Laudencia-Chingcuanco, D., Ganeshan, S., You, F.M., Fowler, D.B., Chibbar, R.N., et Anderson, O.D. (2012). « Expression of CBF Genes in Crowns of Near-isogenic Winter and Spring- habit Hexaploid Wheat (Triticum aestivum L.) During Cold Acclimation. », Plant & Animal Genome XX Conference, Town & Country Convention Center, San Diego, CA, USA, January 14-18, 2012. (Affiche)
  • Sehgal, S.K., Akhunov, E.D., Li, W., Kaur, G., Catana, V., Pillamari, J., Faris, J.D., Reddy, L., Devos, K.M., Rabinowicz, P.D., Chan, A.P., Maiti, R., Šimková, H., Šafář, J., Doležel, J., Luo, M.-C., Ma, Y.Q., You, F.M., et Gill, B.S. (2012). « Physical and Genetic Framework of Chromosome 3A of Bread Wheat. », Plant & Animal Genome XX Conference, Town & Country Convention Center, San Diego, CA, USA, January 14-18, 2012. (Affiche)
  • Wang, Y., You, F.M., Yan, E., Lazo, G.R., Luo, M.-C., Kianian, S.F., et Gu, Y.Q. (2012). « PGSCED: A database for plant gene structure comparison and evolution. », Plant & Animal Genome XX Conference, Town & Country Convention Center, San Diego, CA, USA, January 14-18, 2012. (Affiche)

2011

  • Blake, V.C., Matthews, D.E., Lazo, G.R., Hane, D., You, F.M., Lee, J., et Anderson, O.D. (2011). « GrainGenes: the Triticeae genome database. », Plant & Animal Genome XIX Conference, Town & Country Convention Center, San Diego, CA, USA, January 15-19, 2011.
  • Close, T.J., Luo, M.-C., Lonardi, S., Alpert, M., Duma, D., Bozdag, S., Farmer, A., May, G.D., Jackson, S.A., Ma, Y.Q., Gu, Y.Q., Wu, J., You, F.M., Diop, N.N., Wanamaker, S., Fenton, R.D., Timko, M.P., Roberts, P.A., et Ehlers, J.D. (2011). « Genome resources for cowpea genotype IT97K-499-35. », Plant & Animal Genome XIX Conference, Town & Country Convention Center, San Diego, CA, USA, January 15-19, 2011. (Affiche)
  • Kladivová, M., Posti, D., Jakobson, I., Peusha, H., Järve, K., Timofejeva, L., Hu, Y., Zhang, Y., You, F.M., Luo, M.-C., Šimková, H., Šafář, J., Doležel, J., et Valarik, M. (2011). « High Density Map Of The Powdery Mildew Resistance QPm.tut-4A Gene Region In Wheat. », Plant & Animal Genome XIX Conference, Town & Country Convention Center, San Diego, CA, USA, January 15-19, 2011. (Affiche)
  • Laudencia-Chingcuanco, D., Ganeshan, S., You, F.M., Fowler, D.B., Chibbar, R.N., et Anderson, O.D. (2011). « Genome-Wide Expression Analysis Of Low Temperature Adaptation In Wheat (Triticum aestivum L.). », Plant & Animal Genome XIX Conference, Town & Country Convention Center, San Diego, CA, USA, January 15-19, 2011. (Affiche)
  • Wang, Y., You, F.M., Dong, L., Luo, M.-C., Denton, A., Leonard, J., Kianian, S.F., Gu, Y.Q., et Lazo, G.R. (2011). « An Integrated Genomics Website To Resolve High-Resolution Physical Maps For Large Plant Genomes. », Plant & Animal Genome XIX Conference, Town & Country Convention Center, San Diego, CA, USA, January 15-19, 2011. (Affiche)
  • You, F.M., Wang, Y., Gu, Y.Q., Luo, M.-C., Huo, N., Deal, K.R., Lee, J., Lazo, G.R., Dvorak, J., et Anderson, O.D. (2011). « HybridVelvet: hybrid assembly of next generation sequencing data using Velvet. », Plant & Animal Genome XIX Conference, Town & Country Convention Center, San Diego, CA, USA, January 15-19, 2011. (Affiche)
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