Parkin, Isobel, Ph.D.
Research Scientist
Contact Information:
107 Science Place
Saskatoon, Saskatchewan S7N 0X2
Telephone: 306-385-9434
Fax: 306-385-9482
Email: isobel.parkin@agr.gc.ca
Areas of Expertise:
- Brassica genomics, comparative genome organisation, global gene expression analysis, abiotic stress responses
Current Projects:
- Genomics, genetics and bioinformatics platforms
- Functional genomics of stress resistance in plants
Affiliations:
- Adjunct Professor, Department of Plant Sciences, University of Saskatchewan
Research publications
2016
- Alahakoon, U.I., Taheri, A., Nayidu, N.K., Epp, D., Yu, M., Parkin, I., Hegedus, D., Bonham-Smith, P., Gruber, M.Y. (2016). Hairy Canola (Brasssica napus) re-visited: Down-regulating TTG1 in an AtGL3-enhanced hairy leaf background improves growth, leaf trichome coverage, and metabolite gene expression diversity, 16(1), http://dx.doi.org/10.1186/s12870-015-0680-5
- Gyawali, S., Harrington, M., Durkin, J., Horner, K., Parkin, I.A.P., Hegedus, D.D., Bekkaoui, D., Buchwaldt, L. (2016). Microsatellite markers used for genome-wide association mapping of partial resistance to Sclerotinia sclerotiorum in a world collection of Brassica napus, 36(6), http://dx.doi.org/10.1007/s11032-016-0496-5
- Zou, J., Hu, D., Liu, P., Raman, H., Liu, Z., Liu, X., Parkin, I.A.P., Chalhoub, B., Meng, J. (2016). Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes, 17(1), http://dx.doi.org/10.1186/s12864-015-2343-1
2015
- Gajardo, H.A., Wittkop, B., Soto-Cerda, B., Higgins, E.E., Parkin, I.A.P., Snowdon, R.J., Federico, M.L., Iniguez-Luy, F.L. (2015). Association mapping of seed quality traits in Brassica napus L. using GWAS and candidate QTL approaches, 35(6), http://dx.doi.org/10.1007/s11032-015-0340-3
- Körber, N., Bus, A., Li, J., Higgins, J., Bancroft, I., Higgins, E.E., Papworth Parkin, I.A., Salazar-Colqui, B., Snowdon, R.J., Stich, B. (2015). Seedling development traits in Brassica napus examined by gene expression analysis and association mapping, 15(1), http://dx.doi.org/10.1186/s12870-015-0496-3
- Taheri, A., Gao, P., Yu, M., Cui, D., Regan, S., Parkin, I., Gruber, M. (2015). A landscape of hairy and twisted: Hunting for new trichome mutants in the Saskatoon Arabidopsis T-DNA population, 17(2), 384-394. http://dx.doi.org/10.1111/plb.12230
- Wei, S., Xi, Y.Z., Song, D.P., Wei, H., Gruber, M.Y., Gao, M.J., Parkin, I., Kachatourians, G., Hannoufa, A. (2015). Quantitative and structural analyses of T-DNA tandem repeats in transgenic Arabidopsis SK mutant lines, 123(1), 183-192. http://dx.doi.org/10.1007/s11240-015-0825-0
2014
- Brown, A.F., Yousef, G.G., Chebrolu, K.K., Byrd, R.W., Everhart, K.W., Thomas, A., Reid, R.W., Parkin, I.A.P., Sharpe, A.G., Oliver, R., Guzman, I., Jackson, E.W. (2014). High-density single nucleotide polymorphism (SNP) array mapping in Brassica oleracea: identification of QTL associated with carotenoid variation in broccoli florets, 127(9), 2051-2064. http://dx.doi.org/10.1007/s00122-014-2360-5
- Chalhoub, B., Denoeud, F., Liu, S., Parkin, I.A.P., Tang, H., Wang, X., Chiquet, J., Belcram, H., Tong, C., Samans, B., Corréa, M., Da Silva, C., Just, J., Falentin, C., Koh, C.S., Le Clainche, I., Bernard, M., Bento, P., Noel, B., Labadie, K., Alberti, A., Charles, M., Arnaud, D., Guo, H., Daviaud, C., Alamery, S., Jabbari, K., Zhao, M., Edger, P.P., Chelaifa, H., Tack, D., Lassalle, G., Mestiri, I., Schnel, N., Le Paslier, M.C., Fan, G., Renault, V., Bayer, P.E., Golicz, A.A., Manoli, S., Lee, T.H., Thi, V.H.D., Chalabi, S., Hu, Q., Fan, C., Tollenaere, R., Lu, Y., Battail, C., Shen, J., Sidebottom, C.H.D., Wang, X., Canaguier, A., Chauveau, A., Bérard, A., Deniot, G., Guan, M., Liu, Z., Sun, F., Lim, Y.P., Lyons, E., Town, C.D., Bancroft, I., Wang, X., Meng, J., Ma, J., Pires, J.C., King, G.J., Brunel, D., Delourme, R., Renard, M., Aury, J.M., Adams, K.L., Batley, J., Snowdon, R.J., Tost, J., Edwards, D., Zhou, Y., Hua, W., Sharpe, A.G., Paterson, A.H., Guan, C., Wincker, P. (2014). Early allopolyploid evolution in the post-neolithic Brassica napus oilseed genome, 345(6199), 950-953. http://dx.doi.org/10.1126/science.1253435
- Fredua-Agyeman, R., Coriton, O., Huteau, V., Parkin, I.A.P., Chèvre, A.M., Rahman, H. (2014). Molecular cytogenetic identification of B genome chromosomes linked to blackleg disease resistance in Brassica napus × B. carinata interspecific hybrids, 127(6), 1305-1318. http://dx.doi.org/10.1007/s00122-014-2298-7
- Kagale, S., Koh, C., Nixon, J., Bollina, V., Clarke, W.E., Tuteja, R., Spillane, C., Robinson, S.J., Links, M.G., Clarke, C., Higgins, E.E., Huebert, T., Sharpe, A.G., Parkin, I.A.P. (2014). The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure, 5 http://dx.doi.org/10.1038/ncomms4706
- Kagale, S., Robinson, S.J., Nixon, J., Xiao, R., Huebert, T., Condie, J., Kessler, D., Clarke, W.E., Edger, P.P., Links, M.G., Sharpe, A.G., Parkin, I.A.P. (2014). Polyploid evolution of the Brassicaceae during the Cenozoic era, 26(7), 2777-2791. http://dx.doi.org/10.1105/tpc.114.126391
- Raman, H., Raman, R., Kilian, A., Detering, F., Carling, J., Coombes, N., Diffey, S., Kadkol, G., Edwards, D., McCully, M., Ruperao, P., Parkin, I.A.P., Batley, J., Luckett, D.J., Wratten, N. (2014). Genome-wide delineation of natural variation for pod shatter resistance in Brassica napus, 9(7), http://dx.doi.org/10.1371/journal.pone.0101673
2013
- Clarke, W.E., Parkin, I.A., Gajardo, H.A., Gerhardt, D.J., Higgins, E., Sidebottom, C., Sharpe, A.G., Snowdon, R.J., Federico, M.L., Iniguez-Luy, F.L. (2013). Genomic DNA enrichment using sequence capture microarrays: A novel approach to discover sequence nucleotide polymorphisms (SNP) in Brassica napus L, 8(12), http://dx.doi.org/10.1371/journal.pone.0081992
- Gyawali, S., Hegedus, D.D., Parkin, I.A.P., Poon, J., Higgins, E., Horner, K., Bekkaoui, D., Coutu, C., Buchwaldt, L. (2013). Genetic diversity and population structure in a world collection of Brassica napus accessions with emphasis on South Korea, Japan, and Pakistan, 53(4), 1537-1545. http://dx.doi.org/10.2135/cropsci2012.10.0614
- Larkan, N.J., Lydiate, D.J., Parkin, I.A.P., Nelson, M.N., Epp, D.J., Cowling, W.A., Rimmer, S.R., Borhan, M.H. (2013). The Brassica napus blackleg resistance gene LepR3 encodes a receptor-like protein triggered by the Leptosphaeria maculans effector AVRLM1, 197(2), 595-605. http://dx.doi.org/10.1111/nph.12043
- Navabi, Z.K., Huebert, T., Sharpe, A.G., O'Neill, C.M., Bancroft, I., Parkin, I.A.P. (2013). Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea, 14(1), http://dx.doi.org/10.1186/1471-2164-14-250
- Yu, F.Q., Peng, G., Falk, K.C., and Parkin, I.A.P. (2013). "Identification of clubroot-resistance genes and development of clubroot resistant canola germplasm.", International Clubroot Workshop, Edmonton, AB, Canada, June 2013, Oral presentation.
2012
- Cárdenas, P.D., Gajardo, H.A., Huebert, T., Parkin, I.A., Iniguez-Luy, F.L., Federico, M.L. (2012). Retention of triplicated phytoene synthase (PSY) genes in Brassica napus L. and its diploid progenitors during the evolution of the Brassiceae, 124(7), 1215-1228. http://dx.doi.org/10.1007/s00122-011-1781-7
- Eynck, C., Séguin-Swartz, G., Clarke, W.E., Parkin, I.A.P. (2012). Monolignol biosynthesis is associated with resistance to Sclerotinia sclerotiorum in Camelina sativa, 13(8), 887-899. http://dx.doi.org/10.1111/j.1364-3703.2012.00798.x
- Taheri, A., Robinson, S.J., Parkin, I., Gruber, M.Y. (2012). Revised selection criteria for candidate restriction enzymes in genome walking, 7(4), http://dx.doi.org/10.1371/journal.pone.0035117
- Wei, S., Gruber, M.Y., Yu, B., Gao, M.J., Khachatourians, G.G., Hegedus, D.D., Parkin, I.A.P., Hannoufa, A. (2012). Arabidopsis mutant sk156 reveals complex regulation of SPL15 in a miR156-controlled gene network, 12 http://dx.doi.org/10.1186/1471-2229-12-169
- Yu, B., Gruber, M.Y., Khachatourians, G.G., Zhou, R., Epp, D.J., Hegedus, D.D., Parkin, I.A.P., Welsch, R., Hannoufa, A. (2012). Arabidopsis cpSRP54 regulates carotenoid accumulation in Arabidopsis and Brassica napus, 63(14), 5189-5202. http://dx.doi.org/10.1093/jxb/ers179
2011
- Li, X., Gao, P., Cui, D., Wu, L., Parkin, I., Saberianfar, R., Menassa, R., Pan, H., Westcott, N., Gruber, M.Y. (2011). The Arabidopsis tt19-4 mutant differentially accumulates proanthocyanidin and anthocyanin through a 3' amino acid substitution in glutathione S-transferase, 34(3), 374-388. http://dx.doi.org/10.1111/j.1365-3040.2010.02249.x
- Navabi, Z.K., Stead, K.E., Pires, J.C., Xiong, Z., Sharpe, A.G., Parkin, I.A.P., Rahman, M.H., Good, A.G. (2011). Analysis of B-genome chromosome introgression in interspecific hybrids of Brassica napus x B. carinata, 187(3), 659-673. http://dx.doi.org/10.1534/genetics.110.124925
- Vijayan, P., Parkin, I.A.P., Karcz, S.R., McGowan, K., Vijayan, K., Vandenberg, A., Bett, K.E. (2011). Capturing cold-stress-related sequence diversity from a wild relative of common bean (Phaseolus angustissimus), 54(8), 620-628. http://dx.doi.org/10.1139/g11-025
- Wang, J., Lydiate, D.J., Parkin, I.A.P., Falentin, C., Delourme, R., Carion, P.W.C., King, G.J. (2011). Integration of linkage maps for the Amphidiploid Brassica napus and comparative mapping with Arabidopsis and Brassica rapa, 12 http://dx.doi.org/10.1186/1471-2164-12-101
- Wang, X., Wang, H., Wang, J., Sun, R., Wu, J., Liu, S., Bai, Y., Mun, J.H., Bancroft, I., Cheng, F., Huang, S., Li, X., Hua, W., Wang, J., Wang, X., Freeling, M., Pires, J.C., Paterson, A.H., Chalhoub, B., Wang, B., Hayward, A., Sharpe, A.G., Park, B.S., Weisshaar, B., Liu, B., Li, B., Liu, B., Tong, C., Song, C., Duran, C., Peng, C., Geng, C., Koh, C., Lin, C., Edwards, D., Mu, D., Shen, D., Soumpourou, E., Li, F., Fraser, F., Conant, G., Lassalle, G., King, G.J., Bonnema, G., Tang, H., Wang, H., Belcram, H., Zhou, H., Hirakawa, H., Abe, H., Guo, H., Wang, H., Jin, H., Parkin, I.A.P., Batley, J., Kim, J.S., Just, J., Li, J., Xu, J., Deng, J., Kim, J.A., Li, J., Yu, J., Meng, J., Wang, J., Min, J., Poulain, J., Hatakeyama, K., Wu, K., Wang, L., Fang, L., Trick, M., Links, M.G., Zhao, M., Jin, M., Ramchiary, N., Drou, N., Berkman, P.J., Cai, Q., Huang, Q., Li, R., Tabata, S., Cheng, S., Zhang, S., Zhang, S., Huang, S., Sato, S., Sun, S., Kwon, S.J., Choi, S.R., Lee, T.H., Fan, W., Zhao, X., Tan, X., Xu, X., Wang, Y., Qiu, Y., Yin, Y., Li, Y., Du, Y. (2011). The genome of the mesopolyploid crop species Brassica rapa, 43(10), 1035-1040. http://dx.doi.org/10.1038/ng.919
2010
- Gao, P., Li, X., Cui, D., Wu, L., Parkin, I., Gruber, M.Y. (2010). A new dominant Arabidopsis transparent testa mutant, sk21-D, and modulation of seed flavonoid biosynthesis by KAN4, 8(9), 979-993. http://dx.doi.org/10.1111/j.1467-7652.2010.00525.x
- Mun, J.H., Kwon, S.J., Seol, Y.-J., Kim, J.A., Jin, M., Kim, J.S., Lim, M.-H., Lee, S.-I., Hong, J.K., Park, T.-H., Lee, S.-C., Kim, B.-J., Seo, M.-S., Baek, S., Lee, M.-J., Shin, J.Y., Hahn, J.-H., Hwang, Y.-J., Lim, K.-B., Park, J.-Y., Lee, J., Yang, T.-J., Yu, H.-J., Choi, I.-Y., Choi, B.-S., Choi, S.R., Ramchiary, N., Lim, Y.P., Fraser, F.C., Drou, N., Soumpourou, E., Trick, M., Bancroft, I., Sharpe, A.G., Parkin, I.A.P., Batley, J., Edwards, D.J., and Park, B.S. (2010). "Sequence and structure of Brassica rapa chromosome A3.", Genome Biology, 11(9, Article R94). doi : 10.1186/gb-2010-11-9-r94
- Parkin, I.A.P., Clarke, W.E., Sidebottom, C., Zhang, W., Robinson, S.J., Links, M.G., Karcz, S.R., Higgins, E.E., Fobert, P., and Sharpe, A.G. (2010). "Towards unambiguous transcript mapping in the allotetraploid Brassica napus.", Genome, 53(11), pp. 929-938. doi : 10.1139/G10-053
2009
- Himelblau, E., Gilchrist, E.J., Buono, K., Bizzell, C., Mentzer, L., Vogelzang, R., Osborn, T., Amasino, R.M., Parkin, I.A.P., Haughn, G.W. (2009). Forward and reverse genetics of rapid-cycling Brassica oleracea, 118(5), 953-961. http://dx.doi.org/10.1007/s00122-008-0952-7
- Robinson, S.J., Tang, L.H., Mooney, B.A., McKay, S.J., Clarke, W.E., Links, M.G., Karcz, S., Regan, S., Wu, Y.Y., Gruber, M.Y., Cui, D., Yu, M., Parkin, I.A. (2009). An archived activation tagged population of Arabidopsis thaliana to facilitate forward genetics approaches, 9 http://dx.doi.org/10.1186/1471-2229-9-101
Other science related publications
2015
- Chu, M.G., Yu, F.Q., Falk, K.C., Gossen, B.D., Parkin, I.A.P., Zhou, R., Vail, S.L., and Peng, G. (2015). "Using a genome-wide SNP array to facilitate the introgression of clubroot resistance from diploid Brassica rapa into amphidiploid B. napus canola.", 14th International Rapeseed Congress, Saskatoon, SK, Canada, July 5-9, 2015.
- Fu, F., Rimmer, S.R., Lydiate, D.J., Hegedus, D.D., Parkin, I.A.P., Adam, J., Harrington, M., McGregor, L., and Buchwaldt, L. (2015). "Mapping of quantitative trait loci in Brassica napus lines from Pakistan and China providing resistance to the Sclerotinia sclerotiorum.", 14th International Rapeseed Congress, Saskatoon, SK, Canada, July 5-9, 2015. (Abstract)
- Huang, Z., Chu, M.G., Falk, K.C., Gossen, B.D., Parkin, I.A.P., Peng, G., and Yu, F.Q. (2015). "Resynthesizing Brassica amphidiploids for resistance to clubroot.", International Rapeseed Congress, Saskatoon, Canada, July 2015.
- Jain, P., Parkin, I.A.P., Soolanayakanahally, R.Y., and Schroeder, W.R. (2015). "Improvement of Seabuckthorn at AAFC in Canada.", International Seabuckthorn Association Meeting, New Delh, India, November 24-26, 2015.
- Jain, P., Parkin, I.A.P., Soolanayakanahally, R.Y., and Schroeder, W.R. (2015). "RNA-Seq analysis of Seabuckthorn (Hippophae spp.): De novo transcriptome assembly, functional annotation and identification of molecular markers.", International Seabuckthorn Association Meeting, New Delhi, India, November 24-26, 2015.
- Jain, P., Parkin, I.A.P., Soolanayakanahally, R.Y., and Schroeder, W.R. (2015). "Seabuckthorn transcriptome: Elucidating putative genes involved in carotenoid biosynthesis.", Plant Biology 2015, Minneapolis, USA, July 26-30, 2015.
- Kagale, S., Nixon, J.H., Khedikar, Y.P., Pasha, A., Provart, N.J., Bollina, V., Clark, W.E., Hegedus, D.D., Sharpe, A.G., and Parkin, I.A.P. (2015). "High-resolution developmental transcriptome of the biofuel crop Camelina sativa: a valuable resource for functional genomics.", 14th International Rapeseed Congress, Saskatoon, SK, Canada, July 5-9, 2015.
- Shunmugam, A.S.K., Soolanayakanahally, R.Y., Yang, L., Horner, K., Higgins, E.E., Lewis, M., Parkin, I.A.P., Vails, S., and Robinson, S. (2015). "Characterizing growth physiology, flowering phenology, yield components and seed quality attributes in founder lines of a spring Brassica napus nested association mapping population.", 14th International Rapeseed Congress, Saskatoon, SK, Canada, July 5-9, 2015.
- Zhang, Y., Chu, M.G., Falk, K.C., Vail, S.L., Gossen, B.D., Parkin, I.A.P., Strelkov, S.E., Hwang, S.F., Peng, G., and Yu, F.Q. (2015). "Introgression of clubroot resistance gene Rcr1 from Brassica rapa into B. napus.", International Rapeseed Congress, Saskatoon, Canada, July 2015.
2014
- Buchwaldt, L., Hegedus, D.D., Parkin, I.A.P., Vail, S.L., Fu, F., Garg, H., Gyawali, S., and Puri, K.D. (2014). "Dissecting quantitative resistance to sclerotinia in Brassica napus.", Applying Genomics to Canola Improvement Workshop, Saskatoon, SK, Canada, December 4, 2014, Invited oral presentation. (Abstract)
- Gnanesh, B.N., McCartney, C.A., Lin, Y., Beattie, A.D., Chong, J., Mitchell Fetch, J.W., Kutcher, H.R., Eckstein, P.E., Jackson, E.W., Menzies, J.G., and Parkin, I.A.P. (2014). "A major QTL for Adult Plant Crown Rust Resistance in Oat.", XXII Plant & Animal Genome Conference, Town & Country Convention Center, San Diego, CA, USA, January 10-15, 2014. (Poster)
2013
- Buchwaldt, L., Fu, F., Gyawali, S., Hegedus, D.D., and Parkin, I.A.P. (2013). "Towards identification of quantitative loci for sclerotinia resistance in Brassica napus germplasm and the underlying defense genes.", GCIRC Technical Meeting, Geneva, Switzerland, April 28- May 1, 2013. (Abstract)
- Buchwaldt, L., Hegedus, D.D., Lydiate, D.J., Parkin, I.A.P., Fu, F., Garg, H., Gyawali, S., and Rimmer, S.R. (2013). "Dissecting quantitative resistance to Sclerotinia sclerotiorum in Asian Brassica napus germplasm.", National Sclerotinia Initiative 9th Annual Meeting, Minneapolis, MN, USA, January 23-25, 2013.
- Mayerhofer, R., Wilde, K., Mayerhofer, M., Lydiate, D.J., Bansal, V.K., Good, A.G., and Parkin, I.A.P. (2013). "Complexities of chromosome landing in a highly duplicated genome: Toward map-based cloning of a gene controlling blackleg resistance in Brassica napus.", Plant & Animal Genome XXI Conference, Town & Country Convention Center, San Diego, CA, USA, January 12-16, 2013. (Presentation)
- McCartney, C.A., Lin, Y., Gnanesh, B.N., Beattie, A.D., Chong, J., Mitchell Fetch, J.W., Kutcher, H.R., Eckstein, P.E., Jackson, E.W., Menzies, J.G., and Parkin, I.A.P. (2013). "Mapping Adult Plant Crown Rust Resistance in Oat.", Canadian Phytopathological Society Annual Meeting, Edmonton, AB, Canada, June 16-19, 2013. (Poster)
- Parkin, I.A.P. (2013). "Sequencing U's Triangle: Update and Insights From The B and C Genomes.", Plant & Animal Genome XXI Conference, Town & Country Convention Center, San Diego, CA, USA, January 12-16, 2013. (Presentation)
2012
- Buchwaldt, L., Hegedus, D.D., and Parkin, I.A.P. (2012). "A genomics approach to sclerotinia resistance in Brassica napus. SaskCanola 20th Anniversary Research Summary."
- Buchwaldt, L., Hegedus, D.D., and Parkin, I.A.P. (2012). "Characterization of S. sclerotiorum clones in western Canada for pathogenicity and genomic relatedness.", Canola Cluster update, Saskatoon, SK, Canada, March 21, 2012.
- Clarke, W.E., Navarre, C., Gajardo, H.A., Gerhardt, D.J., Sharpe, A.G., Parkin, I.A.P., Federico, M.L., and Iniguez-Luy, F.L. (2012). "High throughput SNP genotyping in Brassica napus L.: SNP detection in genomic areas associated to traits of agronomical and nutritional importance.", Plant & Animal Genome XX Conference, Town & Country Convention Center, San Diego, CA, USA, January 14-18, 2012.
- Hegedus, D.D., Buchwaldt, L., and Parkin, I.A.P. (2012). "Development of sclerotinia resistant Brassica napus lines and molecular markers for marker-assisted breeding.", Canola Cluster update, Saskatoon, SK, Canada, March 21, 2012.
- Kagale, S., Koh, C., Bollina, V., Clarke, C., Sharpe, A.G., and Parkin, I.A.P. (2012). "Genome Sequencing and Analysis of the Emerging Oilseed Crop Camelina sativa.", 6th International Symposium on Brassica and 18th Crucifer Genetics Workshop, Catania, Sicily, Italy, November 12-16, 2012.
- Lahlali, R.L., Peng, G., McGregor, L., Yu, F.Q., Zhang, W., Parkin, I.A.P., McDonald, M.R., and Gossen, B.D. (2012). "Transcriptomic analysis of canola responses to endophytic fungus Heteroconium chaetospira B1HB2, a biocontrol agent against clubroot.", Joint Meeting of CPS Saskatchewan Group and Plant Pathological Society of Alberta, Canada, November, 2012. (Poster)
- Parkin, I.A.P. (2012). "Uncovering the Ancestral Blocks Reveals the Hexaploid Genome of the Emerging Biofuel Crop, Camelina sativa.", Plant & Animal Genome XX Conference, Brassica workshop, Town & Country Convention Center, San Diego, CA, USA, January 14-18, 2012. (Presentation)
- Parkin, I.A.P., Kagale, S., and Robinson, S.J. (2012). "Capturing the Leaf Transcriptome of Isatis tinctoria L.", 6th International Symposium on Brassica and 18th Crucifer Genetics Workshop, Catania, Sicily, Italy, November 12-16, 2012.
- Parkin, I.A.P., Koh, C., Clarke, C., Navabi, Z.-K., and Sharpe, A.G. (2012). "Exploring the Brassica B Genome at the Whole Genome Sequence Level.", 6th International Symposium on Brassica and 18th Crucifer Genetics Workshop, Catania, Sicily, Italy, November 12-16, 2012.
2011
- Buchwaldt, L., Hegedus, D.D., and Parkin, I.A.P. (2011). "Sclerotinia resistance in B. napus – an update.", Cargill, Aberdeen, SK, Canada, November 23, 2011. (Presentation)
- Clarke, W.E., Sidebottom, C., Parkin, I.A.P., and Sharpe, A.G. (2011). "SaskPrimer - An automated pipeline for design of intron-spanning PCR primers in non-model organisms.", IEEE International Conference on Bioinformatics and Biomedicine Workshops, Georgia World Congress Center, Atlanta, GA, USA, November 12-15, 2011, pp. 173-177.
- Eynck, C., Clarke, W.E., Séguin-Swartz, G.T., and Parkin, I.A.P. (2011). "Stopping the enemy in its tracks – towards understanding the role of monolignol biosynthesis in resistance of Camelina sativa to Sclerotinia sclerotiorum.", Canadian Journal of Plant Pathology, 33(2), pp. 275. (Abstract)
- Eynck, C., Clarke, W.E., Sidebottom, C., Séguin-Swartz, G.T., Sharpe, A.G., and Parkin, I.A.P. (2011). "A new crop threatened by a long-known pathogen: studies on resistance of Camelina sativa to Sclerotinia sclerotiorum.", Camelina Project (Genome Atlantic) Annual General Meeting, Truro, NS, Canada, June 2011.
- Eynck, C., Clarke, W.E., Sidebottom, C., Sharpe, A.G., Séguin-Swartz, G.T., and Parkin, I.A.P. (2011). "Molecular analysis of resistance to Sclerotinia sclerotiorum in Camelina sativa.", 13th International Rapeseed Congress, Prague, Czech Republic, June 5-9, 2011.
- Fu, F., Harrington, M., Hegedus, D.D., Bekkaoui, D.R., Parkin, I.A.P., and Buchwaldt, L. (2011). "Co-location of defence genes from expression studies with QTLs conferring sclerotinia resitance in Brassica napus.", 8th Canadian Plant Genomics Workshop, Niagara Falls, ON, Canada, August 22-25, 2011. (Workshop)
- Gruber, M.Y., Li, X., Gao, P., Cui, D., Yu, M., Nayidu, N., Nayidu, N.K., Alahakoon, U.I., Wei, S., Yu, B., Holowachuk, J., Bonham-Smith, P.C., Regan, S., Hannoufa, A., Hossein, Z., and Parkin, I.A.P. (2011). "Unravelling Mysteries in the Regulation of Plant Secondary Metabolites and Non-glandular Trichomes: New Mechanisms and Crop Applications.", 50th Anniversary Meeting of the Phytochemical Society of North America, Fairmont Orchid Hotel and HILO Conference Centre, Kohala Coast, Big Island, HI, USA, December 10-15, 2011. (Presentation)
- Gyawali, S., Buchwaldt, L., Harrington, M., Parkin, I.A.P., Bekkaoui, D.R., Horner, K., Higgins, E.E., and Hegedus, D.D. (2011). "Association mapping of stem rot resistance in a world collection of Brassica napus.", American Phytopathological Society (APS) 2011 Joint Annual Meeting & International Association for the Plant Protection Sciences (IPPC), Honolulu, HI, USA, August 6-10, 2011.
- Hannoufa, A., Wei, S., Gruber, M.Y., Khachatourians, G.G., Wang, Y., Hegedus, D.D., and Parkin, I.A.P. (2011). "MicroRNA156: A new player in regulating carotenoid accumulation in plants.", Canadian Society of Plant Physiologists Eastern Regional Meeting & Plant Development Workshop / Congrès de la Société Canadienne de Physiologie Végétale & Congrès de Développement Végétale (Congrès Régional de l’Est), Carleton University, Ottawa, ON, Canada, December 2-3, 2011, SB-1, pp. 17.
- Hannoufa, A., Wei, S., Gruber, M.Y., Yu, B., Khachatourians, G.G., Hegedus, D.D., and Parkin, I.A.P. (2011). "MiR156b alters plant morphology and seed carotenoid content in Arabidopsis thaliana and Brassica napus through the SPL gene regulatory network.", 7th International Symposium on Biocatalysis and Agricultural Biotechnology, Kyoto, Japan.
- Hegedus, D.D., Buchwaldt, L., and Parkin, I.A.P. (2011). A genomics approach to sclerotinia resistance in Brassica napus. SaskCanola 20th Anniversary Research Summary., Agriculture and Agri-Food Canada (AAFC)/Agriculture et Agroalimentaire Canada (AAC). (Report)
- Kutcher, H.R., Dokken-Bouchard, F.L., Turkington, T.K., Fernando, W.G.D., Boyetchko, S.M., Buchwaldt, L., Hegedus, D.D., and Parkin, I.A.P. (2011). "Managing sclerotinia stem rot in canola.", Canola Research Summit meeting, Winnipeg, MB, Canada, April 12-13, 2011.
2010
- Buchwaldt, L., Hegedus, D.D., and Parkin, I.A.P. (2010). "Sclerotinia research at AAFC, Saskatoon.", Canola Industry Meeting, Garden Inn Hotel, Saskatoon, SK, Canada, December 8, 2010. (Presentation)
- Eynck, C., Clarke, W.E., Sidebottom, C., Sharpe, A.G., Séguin-Swartz, G.T., and Parkin, I.A.P. (2010). "Sclerotinia stem rot resistance in Camelina sativa.", Canadian Phytopathological Society (CPS-SK) Saskatchewan Regional 2010 Meeting, Saskatoon, SK, Canada, December 9, 2010.
- Eynck, C., Sidebottom, C., Clarke, W.E., Sharpe, A.G., Séguin-Swartz, G.T., and Parkin, I.A.P. (2010). "SNP discovery in Camelina sativa – towards identifying molecular markers for resistance to Sclerotinia sclerotiorum.", 17th Crucifer Genetics Workshop Brassica, Saskatoon, SK, Canada, September 5-8, 2010.
- Eynck, C., Singh, R., Higgins, E.E., Gugel, R.K., Huebert, T., and Parkin, I.A.P. (2010). "Development of genomic resources for Camelina sativa.", 17th Crucifer Genetics Workshop Brassica, Saskatoon, SK, Canada, September 5-8, 2010.
- Singh, R., Higgins, E.E., Gugel, R.K., Huebert, T., and Parkin, I.A.P. (2010). "Development of genomic resources for Camelina sativa.", 17th Crucifer Genetics Workshop Brassica, Saskatoon, SK, Canada, September 5-8, 2010.
2009
- Drury, C.F., Parkin, I.A.P., Reynolds, W.D., Saso, J.K., Lauzon, J.D., Zhang, T.Q., Tan, C.S., Yang, J.Y., Yang, X.M., Welacky, T.W., and Reid, K. (2009). "Refining the N index to determine the risk of nitrate contamination of surface and groundwater for Ontario soils.", Nutrient Management Joint Research Forum, Delta Guelph Hotel and Conference Centre, Guelph, ON, Canada, March 3, 2009. (Presentation)
- Robinson, S.J. and Parkin, I.A.P. (2009). "Bridging the Gene-to-Function Knowledge Gap Through Functional Genomics.", in Gustafson, J.P., Langridge, P., and Somers, D.J. (eds.) - Plant Genomics: Methods and Protocols. Series: Methods in Molecular Biology. Vol. 513, Humana Press Inc, USA, pp. 153-173.
- Wei, S., Gruber, M.Y., Khachatourians, G.G., Hegedus, D.D., Parkin, I.A.P., and Hannoufa, A. (2009). "Characterization of an Arabidopsis MiR156b activation tagged mutant reveals SPL15 diverse roles.", American Society Plant Pathology Annual Meeting, Honolulu, Hawaii, USA.
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