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Bakkeren, Guus, Ph.D.

This page contains a list of publications. A full profile of this scientist is available at Guus Bakkeren

Research publications

2018

2017

2016

2015

2014

2013

2012

2011

2010

Other science related publications

2018

  • Huang M, Fernando U, Djuric-Ciganovic S, Wang X, Bakkeren G, Linning R, Bykova NV, Rampitsch C (2018) Quantitative proteomic approaches to characterize the dynamic and comprehensive defence responses of wheat to leaf rust. 66th ASMS Conference on Mass Spectrometry and Allied Topics, San Diego, CA, USA, June 3-7, 2018. Poster

2015

  • Bakkeren, G., Fellers, J.P., Linning, R., Szabo, L.J., Hulbert, S., Chen, X., McCallum, B.D., Wang, X., Hamelin, R.C., Saville, B.J., Saville, B.J., and Cuomo, C.A. (2015). "Mating-type genes in cereal rust fungi.", 28th Fungal Genetics Conference, Pacific Grove, CA, USA, March 17-22, 2015, Invited oral presentation. (Abstract)
  • Bakkeren, G., Linning, R., Joly, D.L., Khalil, H.B., Wang, X., Panwar, V., Mullock, B., Goldberg, J., Young, S., Fellers, J.P., Szabo, L.J., Hulbert, S., Chen, X., Hamelin, R.C., McCallum, B.D., Cuomo, C.A., and Saville, B.J. (2015). "Comparative genomics of rust fungi to probe wheat interactions; the road to crop protection.", Botany 2015, Shaw Convention Center, Edmonton, Alberta, Canada, July 25-29, 2015, Invited oral presentation. (Abstract)
  • Khalil, H.B., Wang, X., Linning, R., Joly, D.L., Cram, D., Thiessen, N., Taylor, G.P., McCallum, B.D., Saville, B.J., and Bakkeren, G. (2015). "Comparative analysis of transcriptome profiles during infection of near-isogenic susceptible or resistant wheat lines by various Puccinia triticina races; time courses reveal race-specific pathogenicity factors and corresponding host reactions.", Botany 2015, Shaw Convention Center, Edmonton, Alberta, Canada, July 25-29, 2015. (Abstract)
  • Montenegro-Alonso, A.P., Ali, S., Linning, R., Grewal, T.S., and Bakkeren, G. (2015). "Functional characterization of barley smut fungus, Ustilago hordei, avirulence effector UhAvr1.", Botany 2015, Shaw Convention Center, Edmonton, Alberta, Canada, July 25-29, 2015. (Abstract)
  • Wang, X., McCallum, B.D., Fetch Jr., T.G., Bakkeren, G., and Saville, B.J. (2015). "The involvement of reactive oxygen species during the germination and infection of wheat leaf rust fungus, Puccinia triticina.", Botany 2015, Shaw Convention Center, Edmonton, Alberta, Canada, July 25-29, 2015. (Abstract)

2014

  • Bélanger, R.R., Lefebvre, F., Joly, D.L., and Bakkeren, G. (2014). "From bad to good fungus: new insights into genetic factors leading to biocontrol lifestyle in fungi.", XVIth International Congress of Virology - International Union of Microbiological Societies (IUMS 2014), July 27 - August 1, 2014, Montréal, Québec, Canada, July 27-August 1, 2014.
  • Bakkeren, G. (2014). "RNA Interference Technology: Applications for Agriculture.", 56th Annual Horticulture Growers’ Short Course, Abbotsford, BC, Canada, January 30, 2014, Invited lecture & chapter in on-line proceeding. Lower Mainland Horticultural Improvement Association.
  • Bakkeren, G., Fellers, J.P., Panwar, V., Joly, D.L., Szabo, L.J., Kolmer, J.A., Hulbert, S., Wang, M., Yin, C., Chen, X., Rampitsch, C., McCallum, B.D., Wang, X., Goldberg, J., Young, S., Hamelin, R.C., Saville, B.J., and Cuomo, C.A. (2014). "Comparative genomics of rust fungi drives research and innovations for crop protection.", 16th conference of the International Society for Molecular Plant-Microbe Interactions, Rhodes, Greece, July 6-10, 2014.
  • Bakkeren, G., Fellers, J.P., Panwar, V., Joly, D.L., Szabo, L.J., Kolmer, J.A., Hulbert, S., Wang, M., Yin, C., Chen, X., Rampitsch, C., McCallum, B.D., Wang, X., Goldberg, J., Young, S., Hamelin, R.C., Saville, B.J., and Cuomo, C.A. (2014). "Comparative genomics of rust fungi drives research and innovations.", XXII Plant & Animal Genome Conference, Town & Country Convention Center, San Diego, CA, USA, January 10-15, 2014.
  • Panwar, V., Jordan, M.C., McCallum, B.D., Fobert, P., and Bakkeren, G. (2014). "Host-induced gene silencing of Puccinia triticina genes shows enhanced resistance to leaf rust disease in transgenic wheat plants.", XVI 2014 APS-CPS Joint Meeting, Minneapolis, Minnesota, USA, August 9-13, 2014. (Abstract)
  • Panwar, V., Kassa, M.T., Bakkeren, G., Fobert, P., Jordan, M.C., McCallum, B.D., and McCartney, C.A. (2014). "VIGS as a powerful genomics resource for identifying host or pathogen gene targets for the control of cereal rust diseases.", 2nd Canadian Wheat Symposium, Saskatoon, SK, Canada, June 8-11, 2014.
  • Rampitsch, C., Bakkeren, G., and McCallum, B.D. (2014). "Custom database searching to reveal differences in the haustoria proteomes of three races of wheat leaf rust, Puccinia triticina.", 1st Meeting of the International Plant Proteomics Organization, Hamburg, Germany, August 31- September 4, 2014. (Presentation)
  • Rampitsch, C., Beimcik, E., Bakkeren, G., Linning, R., Joly, D.L., and McCallum, B.D. (2014). "Quantitative proteomics with custom database searching to reveal differences in the haustorial proteomes of three races of wheat leaf rust, Puccinia triticina.", 12th European Conference on Fungal Genetics, Sevilla, Spain, March 2014.
  • Rampitsch, C., Beimcik, E., Günel, A., Bakkeren, G., Linning, R., Joly, D.L., McCallum, B.D., and Fan, T. (2014). "Custom database searching to reveal differences in the haustorial proteomes of three races of wheat leaf rust, Puccinia triticina.", Canadian Society of Mass Spectrometry, Montreal, QC, Canada, April 13-16, 2014.

2013

  • Joly, D.L., Mulock, B.S., Cuomo, C.A., Saville, B.J., McCallum, B.D., and Bakkeren, G. (2013). "Illumina-based genetic linkage map for wheat leaf rust.", 27th American Genetics Society meeting on Fungal Genetics, Asilomar, CA, USA
  • Rampitsch, C., Beimcik, E., Bakkeren, G., and Fan, T. (2013). "Comparative proteomics in Puccinia triticina using race-specific database searches.", 26th CSMS conference, Lake Louise AB, Canada. (Poster)
  • Rampitsch, C., Beimcik, E., Günel, A., Bakkeren, G., McCallum, B.D., and Fan, T. (2013). "Comparative proteomics of monoclonal-antibody enriched haustoria from three races of Puccinia triticina.", 27th American Genetics Society meeting on Fungal Genetics, Asilomar, CA, USA. (Poster)

2012

  • Bakkeren, G., Joly, D.L., Wang, X., Thiessen, N., Taylor, G.P., Jackman, S.D., Birol, I., Jones, S., McCallum, B.D., Hamelin, R.C., and others (2012). "Deep-sequencing of multiple race-leaf rust, Puccinia triticina genomes and transcriptomes during wheat infection.", 15th International Congress on Molecular Plant-Microbe Interactions (MPMI), Kyoto International Conference Center, Kyoto, Japan, July 29-August 2, 2012. (Poster)
  • Panwar, V., McCallum, B.D., and Bakkeren, G. (2012). "Host-expressed in-vivo silencing of fungal pathogenicity genes suppresses disease in the wheat-Puccinia triticina leaf rust pathosystem.", 2012 Keystone Symposia on Molecular and Cellular Biology: Gene Silencing by Small RNAs (B1), Fairmont Hotel Vancouver, Vancouver, BC, Canada, February 7-12, 2012. (Poster)
  • Rampitsch, C., Beimcik, E., Günel, A., Gunel, A., Bakkeren, G., McCallum, B.D., and Fan, T. (2012). "The proteome of haustoria from Puccinia triticina.", 13th International Cereal Rusts and Powdery Mildews Conference (ICRPMC), Beijing Friendship Hotel, Beijing, China, August 28-31, 2012. (Poster)

2011

  • Bakkeren, G., Song, X., Panwar, V., Linning, R., Joly, D.L., Wang, X., Rampitsch, C., McCallum, B.D., Fellers, J.P., and Saville, B.J. (2011). "Functional genomic approaches for the wheat leaf rust fungus.", North American Rust Workers Meeting (NARW), St. Paul, MN, USA, June 12, 2011. (Presentation)
  • Bakkeren, G., Song, X., Panwar, V., and Linning, R. (2011). "Functional genomic approaches for the wheat leaf rust fungus.", Borlaug Global Rust Initiative (BGRI) 2011 Technical Workshop, St. Paul, MN, USA, June 13-16, 2011.
  • Cuomo, C.A., Duplessis, S., Grabherr, M.G., Mauceli, E., Sakthikumar, S., Young, S., Zeng, Q., Bakkeren, G., Chen, X.M., Fellers, J.P., Grigoriev, I.V., Martin, F.N., Martin, F., and Szabo, L.J. (2011). "Comparative Genomic Analysis of Rust Fungi.", Plant & Animal Genome XIX Conference, Town & Country Convention Center, San Diego, CA, USA, January 15-19, 2011, W268. (Presentation)
  • Fellers, J.P., Segovia, V., Cuomo, C.A., Bakkeren, G., Huang, L., and Szabo, L.J. (2011). "Applying genomics to identify avirulence proteins in wheat leaf rust, Puccinia triticina.", Plant & Animal Genome XIX Conference, Town & Country Convention Center, San Diego, CA, USA, January 15-19, 2011. (Presentation)
  • Hamelin, R.C., Bakkeren, G., Saville, B., McCallum, B.D., Fetch Jr., T.G., Wang, X., Joly, D.L., and Tanguay, P. (2011). "Emergence and evolution of forest and cereal rusts.", Quebec Society for Plant Protection Annual Meeting: Exotic and invasive species., Montmagny, QC, Canada, June 2011. (Presentation)
  • Wang, X., McCallum, B.D., Fetch Jr., T.G., Bakkeren, G., Marais, G.F., Saville, B.J., Saville, B.J. (2011). "Comparative analysis of Thatcher isogenic lines with wheat leaf rust resistance genes Lr2a, Lr3, LrB and Lr9 interacting with different Puccinia triticina virulence phenotypes.", Borlaug Global Rust Initiative (BGRI) 2011 Technical Workshop, St. Paul, MN, USA, June 13-16, 2011. (Poster)
  • Wang, X., McCallum, B.D., Fetch Jr., T.G., Bakkeren, G., and Saville, B. (2011). "Leaf extracts from Thatcher inoculated with the avirulent race of Puccinia triticina confer race-specific resistance in Thatcher-Lr2a through infiltration.", 7th Canadian Workshop on Fusarium Head Blight (CWFHB) / Colloque canadien sur la fusariose, Delta Winnipeg Hotel, Winnipeg, MB, Canada, November 27-30, 2011. (Poster)
  • Wang, X., McCallum, B.D., Fetch Jr., T.G., Bakkeren, G., and Saville, B. (2011). "Leaf extracts from Thatcher wheat inoculated with the avirulent race of Puccinia triticina confers race-specific resistance in Thatcher-Lr2a through infiltration.", 1st Canadian Wheat Symposium, Winnipeg, MB, Canada, November 30-December 2, 2011, pp. 65.

2010

  • Bakkeren, G., Ali, S., Laurie, J.D., Cervantes-Chávez, J.A., Song, X., and Linning, R. (2010). "Genetic and genomic studies to understand the molecular basis of sex and pathogenicity in Ustilago species.", XVI Biennial Workshop on the Smuts and Bunts, Lethbridge, AB, Canada, June 14-18, 2010. (Presentation)
  • Bakkeren, G., Song, X., Panwar, V., Linning, R., and Saville, B. (2010). "Functional genomics approaches in Cereal Rusts.", 2010 Joint Annual Meeting and Conference of the Canadian Phytopathological Society with the Pacific Division of the American Phytopathological Society, University of British Columbia, Vancouver, BC, Canada, June 20-23, 2010. (Presentation)
  • Cuomo, C.A., Sakthikumar, S., Grabherr, M.G., Heiman, D.I., Mauceli, E., Chen, Z., Young, S., Zeng, Q., Birren, B.W., Bakkeren, G., Fellers, J.P., and Szabo, L.J. (2010). "Comparative Genomics of Wheat Rust Fungi: Progress and Prospects.", Plant & Animal Genome XVIII Conference, Town & Country Convention Center, San Diego, CA, USA, January 9-13, 2010, W404. (Presentation)
  • Marais, G.F., McCallum, B.D., Fetch Jr., T.G., Bakkeren, G., Wang, X., and Saville, B. (2010). "Development of Thatcher near-isogenic lines for recently discovered leaf rust resistance genes.", 8th International Wheat Conference (8IWC) and Borlaug Global Rust Initiative (BGRI) 2010 Technical Workshop, St. Petersburg, Russia, June 1-4, 2010. (Poster)
  • Wang, X., McCallum, B.D., Fetch Jr., T.G., Bakkeren, G., Marais, G.F., and Saville, B. (2010). "Comparative analysis of Thatcher near-isogenic wheat lines with leaf rust resistance genes Lr2a, Lr3, and LrB interacting with Puccinia triticina virulence phenotypes BBBD, MBDS and FBDJ.", 8th International Wheat Conference (8IWC) and Borlaug Global Rust Initiative (BGRI) 2010 Technical Workshop, St. Petersburg, Russia, June 1-4, 2010. (Poster)
  • Wang, X., McCallum, B.D., Fetch Jr., T.G., Bakkeren, G., Marais, G.F., and Saville, B. (2010). "Semi-quantitative-PCR and fluorescence microscopy analysis of the progression Puccinia triticina (Eriks) in the compatible and incompatible interaction using Thatcher near-isogenic wheat lines with leaf rust resistance genes Lr2a, Lr3and LrB.", Canadian Phytopathological Society (CPS) & Pacific Division of the American Phytopathological Society Joint 2010 Meeting, University of British Columbia, Vancouver, BC, Canada, June 20-23, 2010, P-25. (Poster)

2009

  • Ali, S., Laurie, J.D., Linning, R., and Bakkeren, G. (2009). "Analysis of a genomic region in the barley smut fungus, Ustilago hordei, containing a cluster of predicted secreted proteins and an avirulence function.", 14th International Congress on Molecular Plant-Microbe Interactions, Centre des congrès de Québec, Québec City, QC, Canada, July 19-23, 2009.
  • Bakkeren, G., Linning, R., Xu, J., Soltani, B.M., Song, X., Rampitsch, C., Mauthe, W.R., Ching, J., McCallum, B.D., Mulock, B.S., Wang, X., Dickinson, M., Anikster, Y., Eilam, T., Cuomo, C.A., and Fellers, J.P. (2009). "The Dawn of P. triticina Genomics; Searching for Crop-Protection Clues Among Molecular Cereal Rust Fungal Treasure Troves.", Plant & Animal Genome XVII Conference, Town & Country Convention Center, San Diego, CA, USA, January 10-14, 2009, W514.
  • Bakkeren, G., Song, X., Soltani, B.M., Linning, R., Mauthe, W.R., Ching, J., Rampitsch, C., Dickinson, M., Szabo, L.J., Cuomo, C.A., and Fellers, J.P. (2009). "Wheat leaf rust, Puccinia triticina, genome resource building and generation of a protein profile from isolated haustoria.", 14th International Congress on Molecular Plant-Microbe Interactions, Centre des congrès de Québec, Québec City, QC, Canada, July 19-23, 2009.
  • Linning, R., Xu, J., Dickinson, M., Anikster, Y., Eilam, T., Fellers, J.P., and Bakkeren, G. (2009). "Construction and analysis of a wheat leaf rust, Puccinia triticina, EST database.", 14th International Congress on Molecular Plant-Microbe Interactions, Centre des congrès de Québec, Québec City, QC, Canada, July 19-23, 2009.
  • Rampitsch, C., Bakkeren, G., Song, X., Soltani, B.M., Linning, R., Banks, T.W., and Mauthe, W.R. (2009). "A protein profile from in planta infection structures of the wheat leaf rust fungus, Puccinia triticina.", 12th International Cereal Rusts and Powdery Mildews Conference (ICRPMC), Antalya, Turkey, October 13-16, 2009. (Poster)
  • Segovia, V., Li, H., Bakkeren, G., and Fellers, J.P. (2009). "Identification of haustorium specific genes of wheat leaf rust (Puccinia triticina Eriks.) that are expressed during early stages of infection.", 14th International Congress on Molecular Plant-Microbe Interactions, Centre des congrès de Québec, Québec City, QC, Canada, July 19-23, 2009.
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