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Samanfar, Bahram, Ph.D.

This page contains a list of publications. A full profile of this scientist is available at Bahram Samanfar.

Research publications

2018

  • Galván Márquez I, Ghiyasvand M, Massarsky A, Babu M, Samanfar B, Omidi K, Moon TW, Smith ML, Golshani A. Zinc oxide and silver nanoparticles toxicity in the baker's yeast, Saccharomyces cerevisiae. PLoS One. 2018 Mar 19;13(3):e0193111.
  • Omidi K, Jessulat M, Hooshyar M, Burnside D, Schoenrock A, Kazmirchuk T, Hajikarimlou M, Daniel M, Moteshareie H, Bhojoo U, Sanders M, Ramotar D, Dehne F, Samanfar B, Babu M, Golshani A. Uncharacterized ORF HUR1 influences the efficiency of non-homologous end-joining repair in Saccharomyces cerevisiae. Gene. 2018 Jan 10;639:128-136. doi: 10.1016/j.gene.2017.10.003.

2017

  • Samanfar B, Molnar SJ, Charette M, Schoenrock A, Dehne F, Golshani A, Belzile F, Cober ER. Mapping and identification of a potential candidate gene for a novel maturity locus, E10, in soybean. Theor Appl Genet. 2016 Nov 10. [Epub ahead of print] PubMed PMID: 27832313.
  • Samanfar B, Shostak K, Moteshareie H, Hajikarimlou M, Shaikho S, Omidi K, Hooshyar M, Burnside D, Márquez IG, Kazmirchuk T, Naing T, Ludovico P, York-Lyon A, Szereszewski K, Leung C, Jin JY, Megarbane R, Smith ML, Babu M, Holcik M, Golshani A. The sensitivity of the yeast, Saccharomyces cerevisiae, to acetic acid is influenced by DOM34 and RPL36A. PeerJ. 2017 Nov 14;5:e4037.
  • azmirchuk T, Dick K, Burnside DJ, Barnes B, Moteshareie H, Hajikarimlou M, Omidi K, Ahmed D, Low A, Lettl C, Hooshyar M, Schoenrock A, Pitre S, Babu M, Cassol E, Samanfar B, Wong A, Dehne F, Green JR, Golshani A. Designing anti-Zika virus peptides derived from predicted human-Zika virus protein-protein interactions. Comput Biol Chem. 2017 Dec;71:180-187. doi: 10.1016/j.compbiolchem.2017.10.011.

2016

  • Gagarinova A, Stewart G, Samanfar B, Phanse S, White CA, Aoki H, Deineko V, Beloglazova N, Yakunin AF, Golshani A, Brown ED, Babu M, Emili A. Systematic Genetic Screens Reveal the Dynamic Global Functional Organization of the Bacterial Translation Machinery. Cell Rep. 2016 Oct 11;17(3):904-916. doi: 10.1016/j.celrep.2016.09.040. PubMed PMID: 27732863.
  • Shaikho S, Dobson CC, Naing T, Samanfar B, Moteshareie H, Hajikarimloo M, Golshani A, Holcik M. Elevated levels of ribosomal proteins eL36 and eL42 control expression of Hsp90 in rhabdomyosarcoma. Translation (Austin). 2016 Oct 4;4(2):e1244395. doi: 10.1080/21690731.2016.1244395. PubMed PMID: 28090422.

2015

  • Burnside D, Moteshareie M, Galvan-Marquez I, Hooshyar M, Samanfar B, Shostak K, Omidi K, Peery H, Smith ML, and Golshani A: Use of chemical genomics to investigate the mechanism of action for inhibitory bioactive natural compounds. In G. Brahmachari (Ed.), Bioactive Natural Compounds: Biology and Chemistry. Wiley-VCH publication, 2015, 544 pages. ISBN: 978-3-527-33794-1.
  • Jessulat M, Malty RH, Nguyen-Tran DH, Deineko V, Aoki H, Vlasblom J, Omidi K, Jin K, Minic Z, Hooshyar M, Burnside D, Samanfar B, Phanse S, Freywald T, Prasad B, Zhang Z, Vizeacoumar F, Krogan NJ, Freywald A, Golshani A, Babu M. Spindle Checkpoint Factors Bub1 and Bub2 Promote DNA Double-Strand Break Repair by Nonhomologous End Joining. Mol Cell Biol. 2015 Jul;35(14):2448-63. doi: 10.1128/MCB.00007-15. PubMed PMID: 25963654; PubMed Central PMCID: PMC4475915.

2014

  • Babu M, Arnold R, Bundalovic-Torma C, Gagarinova A, Wong KS, Kumar A, Stewart G, Samanfar B, Aoki H, Wagih O, Vlasblom J, Phanse S, Lad K, Yeou Hsiung Yu A, Graham C, Jin K, Brown E, Golshani A, Kim P, Moreno-Hagelsieb G, Greenblatt J, Houry WA, Parkinson J, Emili A. Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli. PLoS Genet. 2014 Feb 20;10(2):e1004120. doi: 10.1371/journal.pgen.1004120. PubMed PMID: 24586182; PubMed Central PMCID: PMC3930520.
  • Omidi K, Hooshyar M, Jessulat M, Samanfar B, Sanders M, Burnside D, Pitre S, Schoenrock A, Xu J, Babu M, Golshani A. Phosphatase complex Pph3/Psy2 is involved in regulation of efficient non-homologous end-joining pathway in the yeast Saccharomyces cerevisiae. PLoS One. 2014 Jan 31;9(1):e87248. doi: 10.1371/journal.pone.0087248. PubMed PMID: 24498054; PubMed Central PMCID: PMC3909046.
  • Samanfar B, Tan le H, Shostak K, Chalabian F, Wu Z, Alamgir M, Sunba N, Burnside D, Omidi K, Hooshyar M, Galván Márquez I, Jessulat M, Smith ML, Babu M, Azizi A, Golshani A. A global investigation of gene deletion strains that affect premature stop codon bypass in yeast, Saccharomyces cerevisiae. Mol Biosyst. 2014 Apr;10(4):916-24. doi: 10.1039/c3mb70501c. PubMed PMID: 24535059.
  • Schoenrock A, Samanfar B, Pitre S, Hooshyar M, Jin K, Phillips CA, Wang H, Phanse S, Omidi K, Gui Y, Alamgir M, Wong A, Barrenäs F, Babu M, Benson M, Langston MA, Green JR, Dehne F, Golshani A. Efficient prediction of human protein-protein interactions at a global scale. BMC Bioinformatics. 2014 Dec 10;15:383. doi: 10.1186/s12859-014-0383-1. PubMed PMID: 25492630; PubMed Central PMCID: PMC4272565.
  • Vlasblom J, Zuberi K, Rodriguez H, Arnold R, Gagarinova A, Deineko V, Kumar A, Leung E, Rizzolo K, Samanfar B, Chang L, Phanse S, Golshani A, Greenblatt JF, Houry WA, Emili A, Morris Q, Bader G, Babu M. Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli. Bioinformatics. 2015 Feb 1;31(3):306-10. doi: 10.1093/bioinformatics/btu671. PubMed PMID: 25316676; PubMed Central PMCID: PMC4308668.

2013

  • Samanfar B, Omidi K, Hooshyar M, Laliberte B, Alamgir M, Seal AJ, Ahmed-Muhsin E, Viteri DF, Said K, Chalabian F, Golshani A, Wainer G, Burnside D, Shostak K, Bugno M, Willmore WG, Smith ML, Golshani A. Large-scale investigation of oxygen response mutants in Saccharomyces cerevisiae. Mol Biosyst. 2013 Jun;9(6):1351-9. doi: 10.1039/c3mb25516f. PubMed PMID: 23467670.

2012

  • Pitre S, Hooshyar M, Schoenrock A, Samanfar B, Jessulat M, Green JR, Dehne F, Golshani A. Short Co-occurring Polypeptide Regions Can Predict Global Protein Interaction Maps. Sci Rep. 2012;2:239. doi: 10.1038/srep00239. PubMed PMID: 22355752; PubMed Central PMCID: PMC3269044.

2011

  • Jessulat M, Pitre S, Gui Y, Hooshyar M, Omidi K, Samanfar B, Tan le H, Alamgir M, Green J, Dehne F, Golshani A. Recent advances in protein-protein interaction prediction: experimental and computational methods. Expert Opin Drug Discov. 2011 Sep;6(9):921-35. doi: 10.1517/17460441.2011.603722. PubMed PMID: 22646215.

2009

  • Omidi M, Alishah O, and Samanfar B: Plant cytogenetics. Tehran University Publication 2009, 565 pages. ISBN: 978-964-03-5905-1.

Other science related publications

2017

  • Samanfar B: Identification of Novel Maturity locus “E10” in Soybeans, Ontario Soybean and Canola Committee, London, ON, Canada, 19th Jan-2017.

2016

  • Samanfar B, Cober E, Charette M, Schoenrock A, Dehne F, Golshani A, Molnar S: A functional genomics approach (PIPE, Protein-protein Interaction Prediction Engine) to identify new early maturity alleles in soybean for Western Canada. Botany 2016, Savannah, USA
  • Samanfar B, Schoenrock A, Dehne F, Golshani A, Cober E, Charette M, Molnar S: PIPE (Protein-protein Interaction Prediction Engine): A computational approach for comprehensive soybean functional genomics. Great Lakes Bioinformatics and the Canadian Computational Biology Conference (GLBIO/CCBC) 2016 (GLBIO/CCBC 2016 Toronto 2016/05/16 - 2016/05/19), Toronto, Canada.

2015

  • Samanfar B, Charette M, Cober E, Molnar S: Early flowering soybean: the art of mixing plant breeding, molecular biology and bioinformatics. Botany 2015 (Botany 2015 Shaw Convention Center Edmonton, Alberta 2015/07/25 - 2015/07/29), Edmonton, Canada
  • Samanfar B, Moteshareie H, Schoenrock A, Hooshyar M, Burnside D, Babu M, Dehne F, Golshani A: Efficient prediction of human protein-protein interactions at a global scale. 4th student/postdoc poster day in computational biology and bioinformatics, 2015, Ottawa, Canada; OISBS, 2015, Mont Tremblant, Canada.

2013

  • Samanfar B, Omidi K, Golshani A: Utilizing yeast genetics to identify novel genes involved in oxygen responding pathway in yeast. RECOMB/ISCB Conference on Regulatory and Systems Genomics, with DREAM Challenges, 2013, Toronto, Canada.
  • Samanfar B, Golshani A: Utilizing yeast genetics to identify novel genes involved in translation fidelity. 63rd Annual Conference of the Canadian Society of Microbiologists (CSM), 2013, Ottawa, Canada.

2012

  • Samanfar B, Tan LH, Golshani A: Yeast, Saccharomyces cerevisiae, global investigation to identify novel genes involved translation fidelity. 13th International Conference on Systems Biology 2012, Toronto, Canada.
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